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Lj3g3v3386780.1

Overview

Field Value
Gene ID Lj3g3v3386780
Transcript ID Lj3g3v3386780.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable E3 ubiquitin-protein ligase ARI7-like [Glycine max] gi|356544392|ref|XP_003540636.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11685
27 494 468 1.00E-165
IPR031127
PANTHER
PTHR11685:SF135
27 494 468 1.00E-165 –
Gene3D
G3DSA:3.30.40.10
114 158 45 9.50E-04
IPR013083
SUPERFAMILY
SSF57850
114 194 81 4.74E-12 –
SMART
SM00647
185 250 66 3.90E-21
IPR002867
Pfam
PF01485
186 250 65 3.10E-14
IPR002867
SUPERFAMILY
SSF57850
187 256 70 7.42E-10 –
ProSiteProfiles
PS50158
237 250 14 8.581
IPR001878
SMART
SM00647
254 313 60 0.037
IPR002867
SUPERFAMILY
SSF57850
270 314 45 9.18E-13 –
Gene3D
G3DSA:3.30.40.10
274 319 46 9.10E-04
IPR013083
Pfam
PF01485
274 313 40 1.90E-06
IPR002867

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0004842
Molecular function Ubiquitin-protein transferase activity Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of
GO:0016567
Biological process Protein ubiquitination The process in which one or more ubiquitin groups are added to a protein.
Subterm of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj3g3v3386780.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3386780.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.