Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj3g3v3511320.1

Overview

Field Value
Gene ID Lj3g3v3511320
Transcript ID Lj3g3v3511320.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: LON peptidase N-terminal domain and RING finger protein 3-like isoform X1 [Cicer arietinum] gi|502144764|ref|XP_004505742.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23041
1 53 53 6.10E-76 –
PANTHER
PTHR23041:SF63
1 53 53 6.10E-76 –
MobiDBLite
mobidb-lite
30 73 44 – –
PANTHER
PTHR23041
70 229 160 6.10E-76 –
PANTHER
PTHR23041:SF63
70 229 160 6.10E-76 –
Gene3D
G3DSA:3.30.40.10
158 222 65 1.70E-17
IPR013083
SUPERFAMILY
SSF57850
173 218 46 7.29E-17 –
ProSiteProfiles
PS50089
174 212 39 12.755
IPR001841
SMART
SM00184
174 211 38 1.20E-05
IPR001841
Pfam
PF13923
174 211 38 3.80E-10 –
CDD
cd00162
174 215 42 9.64E-10 –
ProSitePatterns
PS00518
189 198 10 –
IPR017907

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj3g3v3511320.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3511320.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.