Domain Predictions — View

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

PF13923

Source: Pfam

Description

Zinc finger, C3HC4 type (RING finger)

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 27

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0073229.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ring 1b [Theobroma cacao] gi\|508707572\|gb\|EOX99468.1\|	Domains G3DSA:3.30.40.10 IPR001841 IPR013083 IPR017907 NON_CYTOPLASMIC_DOMAIN PF13923 PS00518 PS50089 PTHR10825 PTHR10825:SF43 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00184 SSF57850 SignalP-TM_GRAM_POSITIVE SignalP-noTM_EUK cd00162 mobidb-lite	20
Lj0g3v0114209.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: E3 ubiquitin-protein ligase COP1-like [Glycine max] gi\|356554527\|ref\|XP_003545597.1\|	Domains Coil G3DSA:2.130.10.10 G3DSA:3.30.40.10 IPR001680 IPR001841 IPR013083 IPR015943 IPR017907 IPR017986 IPR019775 IPR033313 PF00400 PF13923 PS00518 PS00678 PS50082 PS50089 PS50294 PTHR22847 PTHR22847:SF451 SM00184 SM00320 SSF50978 SSF57850 cd00162 mobidb-lite	26
Lj0g3v0312049.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Glycine max] gi\|356508525\|ref\|XP_003523006.1\|	Domains Coil G3DSA:1.25.40.10 G3DSA:3.30.40.10 IPR001841 IPR003111 IPR011990 IPR013083 IPR015947 IPR017907 IPR019734 PF02190 PF13923 PS00518 PS50089 PTHR23327 PTHR23327:SF9 SM00028 SM00184 SM00464 SSF48452 SSF57850 SSF88697 cd00162	23
Lj1g3v4454670.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: E3 ubiquitin protein ligase DRIP2-like [Glycine max] gi\|356503576\|ref\|XP_003520583.1\|	Domains G3DSA:3.30.40.10 IPR001841 IPR013083 IPR017907 PF13923 PS00518 PS50089 PTHR10825 PTHR10825:SF28 SM00184 SSF57850 cd00162 mobidb-lite	13
Lj3g3v0826180.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: E3 ubiquitin-protein ligase DZIP3-like [Cicer arietinum] gi\|502128059\|ref\|XP_004499922.1\|	Domains G3DSA:3.30.40.10 IPR001841 IPR013083 PF13923 PS50089 PTHR22763 PTHR22763:SF3 SSF57850 cd00162	9
Lj3g3v2809850.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ring 1b [Theobroma cacao] gi\|508707572\|gb\|EOX99468.1\|	Domains Coil G3DSA:3.30.40.10 IPR001841 IPR013083 IPR017907 PF13923 PS00518 PS50089 PTHR10825 PTHR10825:SF43 SM00184 SSF57850 cd00162 mobidb-lite	14
Lj3g3v2920810.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: ATP-dependent helicase rhp16-like isoform X1 [Cicer arietinum] gi\|502145992\|ref\|XP_004506272.1\|	Domains Coil G3DSA:3.30.40.10 G3DSA:3.40.50.300 IPR000330 IPR001650 IPR001841 IPR013083 IPR014001 IPR017907 IPR027417 PF00176 PF00271 PF13923 PS00518 PS50089 PS51192 PS51194 PTHR10799 PTHR10799:SF763 SM00184 SM00487 SM00490 SSF52540 SSF57850 cd00046 cd00079 cd00162 mobidb-lite	28
Lj3g3v2920810.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: ATP-dependent helicase rhp16-like isoform X1 [Cicer arietinum] gi\|502145992\|ref\|XP_004506272.1\|	Domains Coil G3DSA:3.30.40.10 G3DSA:3.40.50.300 IPR000330 IPR001650 IPR001841 IPR013083 IPR014001 IPR017907 IPR027417 PF00176 PF00271 PF13923 PS00518 PS50089 PS51192 PS51194 PTHR10799 PTHR10799:SF763 SM00184 SM00487 SM00490 SSF52540 SSF57850 cd00046 cd00079 cd00162 mobidb-lite	28
Lj3g3v3511320.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: LON peptidase N-terminal domain and RING finger protein 3-like isoform X1 [Cicer arietinum] gi\|502144764\|ref\|XP_004505742.1\|	Domains G3DSA:3.30.40.10 IPR001841 IPR013083 IPR017907 PF13923 PS00518 PS50089 PTHR23041 PTHR23041:SF63 SM00184 SSF57850 cd00162 mobidb-lite	13
Lj6g3v1946530.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Glycine max] gi\|356557797\|ref\|XP_003547197.1\|	Domains G3DSA:3.30.40.10 IPR001841 IPR013083 IPR017907 IPR031099 PF13923 PS00518 PS50089 PTHR13763 PTHR13763:SF1 SM00184 SSF57850 cd00162	13
LotjaGi1g1v0067500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	E3 ubiquitin-protein ligase COP1; TAIR: AT2G32950.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp\|P93471\|COP1_PEA E3 ubiquitin-protein ligase COP1; TrEMBL-Plants: tr\|G7KH91\|G7KH91_MEDTR E3 ubiquitin-protein ligase COP1; Found in the gene: LotjaGi1g1v0067500	Domains Coil G3DSA:2.130.10.10 G3DSA:3.30.40.10 IPR001680 IPR001841 IPR013083 IPR015943 IPR017907 IPR017986 IPR019775 IPR036322 IPR042755 PF00400 PF13923 PS00518 PS00678 PS50082 PS50089 PS50294 PTHR44080 PTHR44080:SF2 SM00184 SM00320 SSF50978 SSF57850 cd16504 mobidb-lite	27
LotjaGi1g1v0194200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RING finger protein 141; TAIR: AT1G18660.1 zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp\|D3YY23\|LONF1_MOUSE LON peptidase N-terminal domain and RING finger protein 1; TrEMBL-Plants: tr\|K7KKL8\|K7KKL8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0194200	Domains Coil G3DSA:1.25.40.10 G3DSA:2.30.130.40 G3DSA:3.30.40.10 IPR001841 IPR003111 IPR011990 IPR013083 IPR015947 IPR017907 IPR019734 PF02190 PF13923 PS00518 PS50089 PS51787 PTHR23327 PTHR23327:SF42 SM00028 SM00184 SM00464 SSF48452 SSF57850 SSF88697	24
LotjaGi1g1v0713200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	E3 ubiquitin protein ligase DRIP2; TAIR: AT2G30580.1 DREB2A-interacting protein 2; Swiss-Prot: sp\|Q94AY3\|DRIP2_ARATH E3 ubiquitin protein ligase DRIP2; TrEMBL-Plants: tr\|A0A151SJ31\|A0A151SJ31_CAJCA Polycomb group RING finger protein 1; Found in the gene: LotjaGi1g1v0713200	Domains G3DSA:3.30.40.10 IPR001841 IPR013083 IPR017907 PF13923 PS00518 PS50089 PTHR46293 PTHR46293:SF1 SM00184 SSF57850 cd17087 mobidb-lite	13
LotjaGi1g1v0713200.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	E3 ubiquitin protein ligase DRIP2; TAIR: AT2G30580.1 DREB2A-interacting protein 2; Swiss-Prot: sp\|Q94AY3\|DRIP2_ARATH E3 ubiquitin protein ligase DRIP2; TrEMBL-Plants: tr\|A0A151SJ31\|A0A151SJ31_CAJCA Polycomb group RING finger protein 1; Found in the gene: LotjaGi1g1v0713200	Domains G3DSA:3.30.40.10 IPR001841 IPR013083 IPR017907 PF13923 PS00518 PS50089 PTHR46293 PTHR46293:SF1 SM00184 SSF57850 cd17087 mobidb-lite	13
LotjaGi1g1v0727200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RING/U-box superfamily protein; TAIR: AT2G42030.1 RING/U-box superfamily protein; Swiss-Prot: sp\|Q8GUK7\|RMA3_ARATH E3 ubiquitin-protein ligase RMA3; TrEMBL-Plants: tr\|A0A0L9U7P9\|A0A0L9U7P9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0727200	Domains G3DSA:3.30.40.10 IPR001841 IPR013083 IPR017907 PF13923 PS00518 PS50089 PTHR12313 PTHR12313:SF51 SM00184 SSF57850 cd16745 mobidb-lite	13
LotjaGi1g1v0782300_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	E3 ubiquitin protein ligase DRIP2; TAIR: AT2G30580.3 DREB2A-interacting protein 2; Swiss-Prot: sp\|Q94AY3\|DRIP2_ARATH E3 ubiquitin protein ligase DRIP2; TrEMBL-Plants: tr\|A0A067EH23\|A0A067EH23_CITSI Uncharacterized protein; Found in the gene: LotjaGi1g1v0782300_LC	Domains Coil G3DSA:3.30.40.10 IPR001841 IPR013083 IPR017907 NON_CYTOPLASMIC_DOMAIN PF13923 PS00518 PS50089 PTHR46293 PTHR46293:SF2 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00184 SSF57850 SignalP-TM	18
LotjaGi1g1v0782400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	E3 ubiquitin protein ligase DRIP2; TAIR: AT2G30580.1 DREB2A-interacting protein 2; Swiss-Prot: sp\|Q94AY3\|DRIP2_ARATH E3 ubiquitin protein ligase DRIP2; TrEMBL-Plants: tr\|A0A0B2Q9V7\|A0A0B2Q9V7_GLYSO E3 ubiquitin protein ligase DRIP2; Found in the gene: LotjaGi1g1v0782400	Domains G3DSA:3.30.40.10 IPR001841 IPR013083 IPR017907 PF13923 PS00518 PS50089 PTHR46293 PTHR46293:SF2 SM00184 SSF57850 cd17087 mobidb-lite	13
LotjaGi3g1v0172500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA/RNA helicase; TAIR: AT5G22750.1 DNA/RNA helicase protein; Swiss-Prot: sp\|Q9FNI6\|SM3L2_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; TrEMBL-Plants: tr\|A0A072VAY9\|A0A072VAY9_MEDTR DNA/RNA helicase; Found in the gene: LotjaGi3g1v0172500	Domains G3DSA:3.30.40.10 IPR000330 IPR001650 IPR001841 IPR013083 IPR014001 IPR014905 IPR017907 IPR027417 PF00176 PF00271 PF08797 PF13923 PS00518 PS50089 PS51192 PS51194 PTHR45626 PTHR45626:SF2 SM00184 SM00487 SM00490 SM00910 SSF52540 SSF57850 cd16449 cd18008 cd18793 mobidb-lite	29
LotjaGi3g1v0172500.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA/RNA helicase; TAIR: AT5G22750.1 DNA/RNA helicase protein; Swiss-Prot: sp\|Q9FNI6\|SM3L2_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; TrEMBL-Plants: tr\|A0A072VAY9\|A0A072VAY9_MEDTR DNA/RNA helicase; Found in the gene: LotjaGi3g1v0172500	Domains G3DSA:3.30.40.10 IPR000330 IPR001650 IPR001841 IPR013083 IPR014001 IPR014905 IPR017907 IPR027417 PF00176 PF00271 PF08797 PF13923 PS00518 PS50089 PS51192 PS51194 PTHR45626 PTHR45626:SF2 SM00184 SM00487 SM00490 SM00910 SSF52540 SSF57850 cd16449 cd18008 cd18793 mobidb-lite	29
LotjaGi3g1v0446000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ring finger protein, putative; TAIR: AT5G44280.1 RING 1A; Swiss-Prot: sp\|Q9FKW0\|RNG1A_ARATH Putative E3 ubiquitin-protein ligase RING1a; TrEMBL-Plants: tr\|K7LW36\|K7LW36_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0446000	Domains Coil G3DSA:3.30.40.10 IPR001841 IPR013083 IPR017907 PF13923 PS00518 PS50089 PTHR46537 PTHR46537:SF1 SM00184 SSF57850 cd16531 mobidb-lite	14
LotjaGi3g1v0452100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	E3 ubiquitin-protein ligase; TAIR: AT5G44280.1 RING 1A; Swiss-Prot: sp\|Q9FKW0\|RNG1A_ARATH Putative E3 ubiquitin-protein ligase RING1a; TrEMBL-Plants: tr\|I1LS58\|I1LS58_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0452100	Domains G3DSA:3.30.40.10 IPR001841 IPR013083 IPR017907 NON_CYTOPLASMIC_DOMAIN PF13923 PS00518 PS50089 PTHR46537 PTHR46537:SF1 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00184 SSF101447 SSF57850 SignalP-TM SignalP-noTM cd16531 mobidb-lite	21
LotjaGi3g1v0467700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA/RNA helicase; TAIR: AT1G05120.1 Helicase protein with RING/U-box domain-containing protein; Swiss-Prot: sp\|P79051\|RHP16_SCHPO ATP-dependent helicase rhp16; TrEMBL-Plants: tr\|A0A1J7HBU3\|A0A1J7HBU3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0467700	Domains Coil G3DSA:3.30.40.10 G3DSA:3.40.50.10810 IPR000330 IPR001650 IPR001841 IPR013083 IPR014001 IPR017907 IPR027417 IPR038718 PF00176 PF00271 PF13923 PS00518 PS50089 PS51192 PS51194 PTHR45626 PTHR45626:SF12 SM00184 SM00487 SM00490 SSF52540 SSF57850 cd18008 cd18793 mobidb-lite	28
LotjaGi3g1v0525700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RING/U-box superfamily protein, putative; TAIR: AT5G48655.1 RING/U-box superfamily protein; Swiss-Prot: sp\|Q9QZS2\|RNF4_MOUSE E3 ubiquitin-protein ligase RNF4; TrEMBL-Plants: tr\|I1LIV9\|I1LIV9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0525700	Domains G3DSA:3.30.40.10 IPR001841 IPR013083 IPR017907 PF13923 PS00518 PS50089 PTHR47094 PTHR47094:SF1 SM00184 SSF57850 mobidb-lite	12
LotjaGi4g1v0058600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	E3 ubiquitin-protein ligase; TAIR: AT1G03770.1 RING 1B; Swiss-Prot: sp\|Q0WX00\|RNG1B_ARATH Putative E3 ubiquitin-protein ligase RING1b; TrEMBL-Plants: tr\|A0A072UYT1\|A0A072UYT1_MEDTR E3 ubiquitin-protein ligase RING1a-like protein, putative; Found in the gene: LotjaGi4g1v0058600	Domains G3DSA:3.30.40.10 IPR001841 IPR013083 IPR017907 PF13923 PS00518 PS50089 PTHR46537 SM00184 SSF57850 cd16531 cd17087 mobidb-lite	13
LotjaGi5g1v0191500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	E3 ubiquitin protein ligase DRIP2; TAIR: AT2G30580.1 DREB2A-interacting protein 2; Swiss-Prot: sp\|Q94AY3\|DRIP2_ARATH E3 ubiquitin protein ligase DRIP2; TrEMBL-Plants: tr\|A0A151U5T5\|A0A151U5T5_CAJCA Polycomb group RING finger protein 1; Found in the gene: LotjaGi5g1v0191500	Domains Coil G3DSA:3.30.40.10 IPR001841 IPR013083 IPR017907 PF13923 PS00518 PS50089 PTHR46293 PTHR46293:SF3 SM00184 SSF57850 cd17087 mobidb-lite	14
LotjaGi5g1v0212200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	E3 ubiquitin protein ligase DRIP2; TAIR: AT2G30580.1 DREB2A-interacting protein 2; Swiss-Prot: sp\|Q94AY3\|DRIP2_ARATH E3 ubiquitin protein ligase DRIP2; TrEMBL-Plants: tr\|K7N522\|K7N522_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0212200	Domains G3DSA:3.30.40.10 IPR001841 IPR013083 IPR017907 PF13923 PS00518 PS50089 PTHR46293 PTHR46293:SF2 SM00184 SSF57850 cd17087 mobidb-lite	13
LotjaGi6g1v0312100_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Breast cancer associated RING 1; TAIR: AT4G21070.1 breast cancer susceptibility1; Swiss-Prot: sp\|Q8RXD4\|BRCA1_ARATH Protein BREAST CANCER SUSCEPTIBILITY 1 homolog; TrEMBL-Plants: tr\|V7BPN4\|V7BPN4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0312100_LC	Domains Coil G3DSA:3.30.40.10 G3DSA:3.40.50.10190 IPR001357 IPR001841 IPR001965 IPR011364 IPR013083 IPR017907 IPR031099 IPR034732 IPR036420 PF00533 PF13771 PF13923 PS00518 PS50089 PS50172 PS51805 PTHR13763 PTHR13763:SF0 SM00184 SM00249 SM00292 SSF52113 SSF57850 cd15571 cd17720 cd17734 mobidb-lite	30

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	3.70