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| Field | Value |
|---|---|
| Gene ID | Lj3g3v3511380 |
| Transcript ID | Lj3g3v3511380.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At1g09820-like [Glycine max] gi|356538593|ref|XP_003537787.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 31 | 107 | 77 | 1.40E-257 | – | |
| PANTHER | 31 | 107 | 77 | 1.40E-257 | – | |
| PANTHER | 124 | 577 | 454 | 1.40E-257 | – | |
| PANTHER | 124 | 577 | 454 | 1.40E-257 | – | |
| ProSiteProfiles | 129 | 163 | 35 | 6.456 | ||
| ProSiteProfiles | 164 | 198 | 35 | 9.482 | ||
| Pfam | 167 | 196 | 30 | 0.048 | ||
| TIGRFAM | 167 | 199 | 33 | 3.50E-06 | ||
| ProSiteProfiles | 199 | 233 | 35 | 13.066 | ||
| Pfam | 202 | 247 | 46 | 1.90E-17 | ||
| TIGRFAM | 202 | 235 | 34 | 1.10E-10 | ||
| ProSiteProfiles | 234 | 271 | 38 | 10.26 | ||
| TIGRFAM | 236 | 273 | 38 | 3.60E-05 | ||
| Pfam | 271 | 319 | 49 | 4.30E-18 | ||
| ProSiteProfiles | 272 | 306 | 35 | 12.693 | ||
| TIGRFAM | 274 | 307 | 34 | 1.30E-09 | ||
| Gene3D | 283 | 546 | 264 | 3.20E-10 | ||
| ProSiteProfiles | 307 | 341 | 35 | 13.746 | ||
| TIGRFAM | 309 | 343 | 35 | 2.40E-10 | ||
| Pfam | 341 | 390 | 50 | 2.00E-19 | ||
| ProSiteProfiles | 342 | 376 | 35 | 12.682 | ||
| TIGRFAM | 344 | 378 | 35 | 2.60E-09 | ||
| ProSiteProfiles | 377 | 411 | 35 | 14.085 | ||
| TIGRFAM | 379 | 413 | 35 | 1.50E-11 | ||
| Pfam | 408 | 440 | 33 | 5.70E-09 | ||
| ProSiteProfiles | 412 | 446 | 35 | 11.104 | ||
| TIGRFAM | 415 | 447 | 33 | 4.50E-06 | ||
| Pfam | 447 | 494 | 48 | 3.40E-18 | ||
| ProSiteProfiles | 447 | 481 | 35 | 13.669 | ||
| TIGRFAM | 449 | 482 | 34 | 1.00E-09 | ||
| ProSiteProfiles | 482 | 516 | 35 | 11.235 | ||
| TIGRFAM | 484 | 512 | 29 | 2.60E-07 | ||
| ProSiteProfiles | 517 | 551 | 35 | 14.009 | ||
| Pfam | 517 | 559 | 43 | 4.90E-15 | ||
| TIGRFAM | 519 | 552 | 34 | 9.70E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj3g3v3511380.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v3511380.1, powered by CORGI.
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