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| Field | Value |
|---|---|
| Gene ID | Lj3g3v3527160 |
| Transcript ID | Lj3g3v3527160.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At1g32415, mitochondrial-like [Cicer arietinum] gi|502160489|ref|XP_004511762.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 62 | 62 | 0 | – | |
| Pfam | 1 | 22 | 22 | 0.011 | ||
| PANTHER | 1 | 62 | 62 | 0 | – | |
| ProSiteProfiles | 1 | 28 | 28 | 7.585 | ||
| ProSiteProfiles | 29 | 63 | 35 | 5.042 | ||
| PANTHER | 98 | 441 | 344 | 0 | – | |
| PANTHER | 98 | 441 | 344 | 0 | – | |
| ProSiteProfiles | 99 | 133 | 35 | 9.109 | ||
| Pfam | 102 | 124 | 23 | 1.60E-05 | ||
| Gene3D | 102 | 305 | 204 | 2.10E-08 | ||
| TIGRFAM | 103 | 124 | 22 | 0.0017 | ||
| TIGRFAM | 133 | 160 | 28 | 2.70E-06 | ||
| Pfam | 133 | 160 | 28 | 4.30E-06 | ||
| ProSiteProfiles | 134 | 160 | 27 | 6.007 | ||
| ProSiteProfiles | 161 | 195 | 35 | 12.134 | ||
| Pfam | 161 | 206 | 46 | 7.40E-08 | ||
| TIGRFAM | 164 | 195 | 32 | 1.80E-07 | ||
| ProSiteProfiles | 231 | 261 | 31 | 7.925 | ||
| Pfam | 236 | 258 | 23 | 0.065 | ||
| ProSiteProfiles | 262 | 296 | 35 | 11.915 | ||
| Pfam | 262 | 309 | 48 | 1.10E-08 | ||
| TIGRFAM | 264 | 298 | 35 | 2.40E-07 | ||
| SUPERFAMILY | 271 | 299 | 29 | 7.59E-06 | ||
| ProSiteProfiles | 297 | 332 | 36 | 8.988 | ||
| TIGRFAM | 299 | 332 | 34 | 2.60E-04 | ||
| ProSiteProfiles | 333 | 363 | 31 | 5.733 | ||
| Pfam | 337 | 357 | 21 | 0.6 | ||
| Gene3D | 341 | 417 | 77 | 2.10E-08 | ||
| SUPERFAMILY | 344 | 417 | 74 | 7.59E-06 | ||
| ProSiteProfiles | 400 | 434 | 35 | 5.546 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj3g3v3527160.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v3527160.1, powered by CORGI.
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