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Lj3g3v3599460.1

Overview

Field Value
Gene ID Lj3g3v3599460
Transcript ID Lj3g3v3599460.1
Lotus japonicus genome version MG20 v3.0
Description Biotin synthase [Medicago truncatula] gi|357474135|ref|XP_003607352.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR22976:SF19
25 373 349 7.40E-245 –
PANTHER
PTHR22976
25 373 349 7.40E-245 –
PIRSF
PIRSF001619
26 358 333 6.40E-139
IPR024177
SFLD
SFLDF00272
27 366 340 0 –
SFLD
SFLDG01278
33 363 331 0 –
Gene3D
G3DSA:3.20.20.70
42 351 310 3.70E-99
IPR013785
Hamap
MF_01694
42 352 311 40.239
IPR002684
SUPERFAMILY
SSF102114
42 351 310 2.22E-82 –
SFLD
SFLDG01060
43 356 314 0 –
TIGRFAM
TIGR00433
51 349 299 1.40E-113
IPR002684
SMART
SM00729
80 288 209 2.40E-40
IPR006638
Pfam
PF04055
86 245 160 7.10E-13
IPR007197
CDD
cd01335
87 287 201 4.20E-14 –
SMART
SM00876
259 351 93 2.00E-38
IPR010722
Pfam
PF06968
259 349 91 3.90E-19
IPR010722

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0004076
Molecular function Biotin synthase activity Catalysis of the reaction: 2 S-adenosyl-L-methionine + dethiobiotin + S(2-) = 2 5'-deoxyadenosine + 2 L-methionine + biotin + H(+).
Subterm of
GO:0009102
Biological process Biotin biosynthetic process The chemical reactions and pathways resulting in the formation of biotin, cis-tetrahydro-2-oxothieno(3,4-d)imidazoline-4-valeric acid.
Subterm of
GO:0051536
Molecular function Iron-sulfur cluster binding Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
Subterm of

Genome browser

LORE1 insertions 9

Expression data

Expression pattern

Expression pattern of Lj3g3v3599460.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3599460.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.