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Lj3g3v3639920.1

Overview

Field Value
Gene ID Lj3g3v3639920
Transcript ID Lj3g3v3639920.1
Lotus japonicus genome version MG20 v3.0
Description topoisomerase I [Pisum sativum] gi|2330649|emb|CAA74890.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10290
1 898 898 0 –
MobiDBLite
mobidb-lite
1 352 352 – –
PANTHER
PTHR10290:SF3
1 898 898 0 –
Gene3D
G3DSA:2.170.11.10
350 369 20 7.20E-61
IPR013030
SUPERFAMILY
SSF56741
350 567 218 8.76E-99
IPR008336
Pfam
PF02919
355 566 212 3.60E-95
IPR008336
CDD
cd00660
355 567 213 8.27E-113 –
Gene3D
G3DSA:1.10.10.41
370 454 85 2.80E-34
IPR013034
Coils
Coil
445 472 28 – –
Gene3D
G3DSA:2.170.11.10
455 568 114 7.20E-61
IPR013030
PRINTS
PR00416
495 504 10 1.30E-45
IPR001631
SMART
SM00435
495 871 377 2.70E-261
IPR013499
Gene3D
G3DSA:3.90.15.10
569 711 143 2.30E-58
IPR014711
Pfam
PF01028
569 793 225 1.50E-89
IPR013500
SUPERFAMILY
SSF56349
569 770 202 2.24E-84
IPR011010
CDD
cd00659
575 768 194 1.70E-74
IPR013500
PRINTS
PR00416
611 630 20 1.30E-45
IPR001631
PRINTS
PR00416
634 648 15 1.30E-45
IPR001631
PRINTS
PR00416
656 672 17 1.30E-45
IPR001631
PRINTS
PR00416
714 728 15 1.30E-45
IPR001631
Gene3D
G3DSA:1.10.132.10
718 898 181 8.60E-68
IPR014727
Coils
Coil
767 801 35 – –
MobiDBLite
mobidb-lite
793 819 27 – –
Coils
Coil
818 845 28 – –
Pfam
PF14370
830 898 69 1.20E-35
IPR025834
ProSitePatterns
PS00176
844 862 19 –
IPR018521
SUPERFAMILY
SSF56349
846 895 50 2.24E-84
IPR011010
PRINTS
PR00416
851 862 12 1.30E-45
IPR001631

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003917
Molecular function DNA topoisomerase type I activity Catalysis of a DNA topological transformation by transiently cleaving one DNA strand at a time to allow passage of another strand; changes the linking number by +1 per catalytic cycle.
Subterm of
GO:0005694
Cellular component Chromosome A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.
Subterm of
GO:0006265
Biological process DNA topological change The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number.
Subterm of

Genome browser

LORE1 insertions 10

Expression data

Expression pattern

Expression pattern of Lj3g3v3639920.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3639920.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.