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GO:0005694

View this GO term in other databases

Overview

Field Value
Namespace Cellular component
Short description Chromosome
Full defintion A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.
Subterm of

Relationships

The relationship of GO:0005694 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

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Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
ISBN

· ISBN: 0198547684

, · pages

Associated Lotus transcripts 56

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
Lj0g3v0116299.1
– Meiotic recombination protein SPO11 [Medicago truncatula] gi|357494931|ref|XP_003617754.1|
GO terms
6
Lj0g3v0116299.3
– PREDICTED: meiotic recombination protein SPO11-1-like [Glycine max] gi|356499439|ref|XP_003518548.1|
GO terms
3
Lj0g3v0253289.1
– AT5G02820-like protein, partial [Capsella rubella] gi|345292731|gb|AEN82857.1|
GO terms
3
Lj0g3v0292879.1
– PREDICTED: meiotic recombination protein SPO11-1-like [Cicer arietinum] gi|502100203|ref|XP_004491659.1|
GO terms
6
Lj0g3v0292879.2
– Meiotic recombination protein SPO11 [Medicago truncatula] gi|357494931|ref|XP_003617754.1|
GO terms
6
Lj0g3v0329199.1
– PREDICTED: DNA topoisomerase 6 subunit A-like isoform 1 [Fragaria vesca subsp]. vesca] gi|470104330|ref|XP_004288560.1|
GO terms
3
Lj0g3v0352439.3
– Meiotic recombination protein SPO11 [Medicago truncatula] gi|357494931|ref|XP_003617754.1|
GO terms
3
Lj0g3v0358309.1
– PREDICTED: structural maintenance of chromosomes protein 2-1-like [Cicer arietinum] gi|502158009|ref|XP_004510992.1|
GO terms
4
Lj2g3v1695250.1
– PREDICTED: structural maintenance of chromosomes protein 1-like isoform X1 [Cicer arietinum] gi|502114983|ref|XP_004495097.1|
GO terms
4
Lj2g3v2051220.1
– PREDICTED: meiotic recombination protein SPO11-2-like isoform X2 [Cicer arietinum] gi|502159864|ref|XP_004511556.1|
GO terms
6
Lj2g3v2051220.2
– PREDICTED: meiotic recombination protein SPO11-2-like isoform X2 [Cicer arietinum] gi|502159864|ref|XP_004511556.1|
GO terms
6
Lj3g3v1917690.1
– PREDICTED: myosin-11-like [Cicer arietinum] gi|502159959|ref|XP_004511587.1|
GO terms
4
Lj3g3v1917690.2
– PREDICTED: myosin-11-like [Cicer arietinum] gi|502159959|ref|XP_004511587.1|
GO terms
4
Lj3g3v3639920.1
– Topoisomerase I [Pisum sativum] gi|2330649|emb|CAA74890.1|
GO terms
4
Lj3g3v3724440.1
– PREDICTED: structural maintenance of chromosomes protein 6-like [Cicer arietinum] gi|502168978|ref|XP_004514508.1|
GO terms
4
Lj4g3v1062150.1
– PREDICTED: structural maintenance of chromosomes protein 4-like [Glycine max] gi|356573489|ref|XP_003554891.1|
GO terms
4
Lj5g3v0611970.1
– PREDICTED: DNA topoisomerase 1-like isoform X1 [Cicer arietinum] gi|502124515|ref|XP_004498560.1|
GO terms
4
Lj5g3v0611970.2
– PREDICTED: DNA topoisomerase 1-like isoform X1 [Cicer arietinum] gi|502124515|ref|XP_004498560.1|
GO terms
4
Lj5g3v0615700.1
–
GO terms
5
Lj5g3v0615710.1
– PREDICTED: DNA topoisomerase 6 subunit A-like [Cicer arietinum] gi|502121820|ref|XP_004497452.1|
GO terms
8
Lj5g3v1073870.1
– PREDICTED: structural maintenance of chromosomes protein 1A-like [Glycine max] gi|356548057|ref|XP_003542420.1|
GO terms
4
Lj5g3v1073870.2
– PREDICTED: structural maintenance of chromosomes protein 1A-like [Glycine max] gi|356548057|ref|XP_003542420.1|
GO terms
4
Lj6g3v2172040.1
– RHL2 [Zea mays] gi|195647934|gb|ACG43435.1|
GO terms
3
LotjaGi1g1v0016700.1
– DNA topoisomerase 6 subunit A; TAIR: AT3G13170.1 Spo11/DNA topoisomerase VI, subunit A protein; Swiss-Prot: sp|Q9M4A2|SPO11_ARATH Meiotic recombination protein SPO11-1; TrEMBL-Plants: tr|G7K4J7|G7K4J7_MEDTR Meiotic recombination SPO11-like protein; Found in the gene: LotjaGi1g1v0016700
GO terms
4
LotjaGi1g1v0016700.2
– DNA topoisomerase 6 subunit A; TAIR: AT3G13170.1 Spo11/DNA topoisomerase VI, subunit A protein; Swiss-Prot: sp|Q9M4A2|SPO11_ARATH Meiotic recombination protein SPO11-1; TrEMBL-Plants: tr|G7K4J7|G7K4J7_MEDTR Meiotic recombination SPO11-like protein; Found in the gene: LotjaGi1g1v0016700
GO terms
4
LotjaGi1g1v0060900.1
– Structural maintenance of chromosomes protein; TAIR: AT2G27170.3 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp|Q56YN8|SMC3_ARATH Structural maintenance of chromosomes protein 3; TrEMBL-Plants: tr|I1M7D7|I1M7D7_SOYBN Structural maintenance of chromosomes protein; Found in the gene: LotjaGi1g1v0060900
GO terms
4
LotjaGi1g1v0060900.2
– Structural maintenance of chromosomes protein; TAIR: AT2G27170.3 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp|Q56YN8|SMC3_ARATH Structural maintenance of chromosomes protein 3; TrEMBL-Plants: tr|I1M7D7|I1M7D7_SOYBN Structural maintenance of chromosomes protein; Found in the gene: LotjaGi1g1v0060900
GO terms
4
LotjaGi1g1v0060900.4
– Structural maintenance of chromosomes protein; TAIR: AT2G27170.3 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp|Q56YN8|SMC3_ARATH Structural maintenance of chromosomes protein 3; TrEMBL-Plants: tr|I1M7D7|I1M7D7_SOYBN Structural maintenance of chromosomes protein; Found in the gene: LotjaGi1g1v0060900
GO terms
4
LotjaGi1g1v0321800.1
– DNA topoisomerase; TAIR: AT5G63920.1 topoisomerase 3alpha; Swiss-Prot: sp|Q9LVP1|TOP3A_ARATH DNA topoisomerase 3-alpha; TrEMBL-Plants: tr|A0A0S3RFA9|A0A0S3RFA9_PHAAN DNA topoisomerase; Found in the gene: LotjaGi1g1v0321800
GO terms
4
LotjaGi1g1v0663600.1
– DNA gyrase subunit B; TAIR: AT5G04130.1 DNA GYRASE B2; Swiss-Prot: sp|Q5YLB4|GYRB_NICBE DNA gyrase subunit B, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A151TTM7|A0A151TTM7_CAJCA DNA gyrase subunit B; Found in the gene: LotjaGi1g1v0663600
GO terms
5
LotjaGi2g1v0064900.1
– DNA gyrase subunit A; TAIR: AT3G10690.1 DNA GYRASE A; Swiss-Prot: sp|Q5YLB5|GYRA_NICBE DNA gyrase subunit A, chloroplastic/mitochondrial; TrEMBL-Plants: tr|G7I9Z9|G7I9Z9_MEDTR DNA gyrase subunit A; Found in the gene: LotjaGi2g1v0064900
GO terms
5
LotjaGi2g1v0088900_LC.1
– DNA topoisomerase 6 subunit A; TAIR: AT5G02820.1 Spo11/DNA topoisomerase VI, subunit A protein; Swiss-Prot: sp|A2XFC1|TOP6A_ORYSI DNA topoisomerase 6 subunit A3; TrEMBL-Plants: tr|A0A061R4D2|A0A061R4D2_9CHLO DNA topoisomerase 6 subunit A; Found in the gene: LotjaGi2g1v0088900_LC
GO terms
7
LotjaGi2g1v0088900_LC.4
– DNA topoisomerase 6 subunit A; TAIR: AT5G02820.1 Spo11/DNA topoisomerase VI, subunit A protein; Swiss-Prot: sp|Q9LZ03|TOP6A_ARATH DNA topoisomerase 6 subunit A; TrEMBL-Plants: tr|A0A061R4D2|A0A061R4D2_9CHLO DNA topoisomerase 6 subunit A; Found in the gene: LotjaGi2g1v0088900_LC
GO terms
7
LotjaGi2g1v0088900_LC.5
– DNA topoisomerase 6 subunit A; TAIR: AT5G02820.1 Spo11/DNA topoisomerase VI, subunit A protein; Swiss-Prot: sp|A2XFC1|TOP6A_ORYSI DNA topoisomerase 6 subunit A3; TrEMBL-Plants: tr|A0A061R4D2|A0A061R4D2_9CHLO DNA topoisomerase 6 subunit A; Found in the gene: LotjaGi2g1v0088900_LC
GO terms
4
LotjaGi2g1v0436400.1
– DNA topoisomerase 6 subunit A; TAIR: AT1G63990.1 sporulation 11-2; Swiss-Prot: sp|Q9M4A1|SPO12_ARATH Meiotic recombination protein SPO11-2; TrEMBL-Plants: tr|I1LGD2|I1LGD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0436400
GO terms
7
LotjaGi2g1v0436400.2
– DNA topoisomerase 6 subunit A; TAIR: AT1G63990.1 sporulation 11-2; Swiss-Prot: sp|Q9M4A1|SPO12_ARATH Meiotic recombination protein SPO11-2; TrEMBL-Plants: tr|G7KC02|G7KC02_MEDTR Meiotic recombination SPO11-like protein; Found in the gene: LotjaGi2g1v0436400
GO terms
7
LotjaGi2g1v0436400.3
– DNA topoisomerase 6 subunit A; TAIR: AT1G63990.2 sporulation 11-2; Swiss-Prot: sp|Q9M4A1|SPO12_ARATH Meiotic recombination protein SPO11-2; TrEMBL-Plants: tr|I1LGD2|I1LGD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0436400
GO terms
7
LotjaGi2g1v0436400.4
– DNA topoisomerase 6 subunit A; TAIR: AT1G63990.1 sporulation 11-2; Swiss-Prot: sp|Q9M4A1|SPO12_ARATH Meiotic recombination protein SPO11-2; TrEMBL-Plants: tr|I1LGD2|I1LGD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0436400
GO terms
7
LotjaGi2g1v0436400.5
– DNA topoisomerase 6 subunit A; TAIR: AT1G63990.1 sporulation 11-2; Swiss-Prot: sp|Q9M4A1|SPO12_ARATH Meiotic recombination protein SPO11-2; TrEMBL-Plants: tr|K7LMM4|K7LMM4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0436400
GO terms
4
LotjaGi2g1v0436400.6
– DNA topoisomerase 6 subunit A; TAIR: AT1G63990.1 sporulation 11-2; Swiss-Prot: sp|Q9M4A1|SPO12_ARATH Meiotic recombination protein SPO11-2; TrEMBL-Plants: tr|K7LMM4|K7LMM4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0436400
GO terms
7
LotjaGi3g1v0061500.1
– Structural maintenance of chromosomes protein; TAIR: AT5G62410.1 structural maintenance of chromosomes 2; Swiss-Prot: sp|Q9C5Y4|SMC21_ARATH Structural maintenance of chromosomes protein 2-1; TrEMBL-Plants: tr|A0A072TZX1|A0A072TZX1_MEDTR Structural maintenance of chromosomes protein; Found in the gene: LotjaGi3g1v0061500
GO terms
4
LotjaGi3g1v0544200.1
– DNA topoisomerase 1; TAIR: AT5G55310.1 DNA topoisomerase 1 beta; Swiss-Prot: sp|Q9FJ79|TOP1B_ARATH DNA topoisomerase 1 beta; TrEMBL-Plants: tr|I1LP26|I1LP26_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0544200
GO terms
4
LotjaGi3g1v0544200.2
– DNA topoisomerase 1; TAIR: AT5G55310.1 DNA topoisomerase 1 beta; Swiss-Prot: sp|Q9FJ79|TOP1B_ARATH DNA topoisomerase 1 beta; TrEMBL-Plants: tr|A0A1J7GEG9|A0A1J7GEG9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0544200
GO terms
4
LotjaGi3g1v0552100.1
– Structural maintenance of chromosomes family protein; TAIR: AT5G07660.1 structural maintenance of chromosomes 6A; Swiss-Prot: sp|Q9FLR5|SMC6A_ARATH Structural maintenance of chromosomes protein 6A; TrEMBL-Plants: tr|A0A0S3SER5|A0A0S3SER5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0552100
GO terms
4
LotjaGi4g1v0139100.1
– Structural maintenance of chromosomes protein; TAIR: AT5G48600.2 structural maintenance of chromosome 3; Swiss-Prot: sp|Q9FJL0|SMC4_ARATH Structural maintenance of chromosomes protein 4; TrEMBL-Plants: tr|A0A151RK13|A0A151RK13_CAJCA Structural maintenance of chromosomes protein 4; Found in the gene: LotjaGi4g1v0139100
GO terms
4
LotjaGi4g1v0139100.3
– Structural maintenance of chromosomes protein; TAIR: AT5G48600.2 structural maintenance of chromosome 3; Swiss-Prot: sp|Q9FJL0|SMC4_ARATH Structural maintenance of chromosomes protein 4; TrEMBL-Plants: tr|A0A151RK13|A0A151RK13_CAJCA Structural maintenance of chromosomes protein 4; Found in the gene: LotjaGi4g1v0139100
GO terms
4
LotjaGi4g1v0139100.4
– Structural maintenance of chromosomes protein; TAIR: AT5G48600.2 structural maintenance of chromosome 3; Swiss-Prot: sp|Q9FJL0|SMC4_ARATH Structural maintenance of chromosomes protein 4; TrEMBL-Plants: tr|A0A151RK13|A0A151RK13_CAJCA Structural maintenance of chromosomes protein 4; Found in the gene: LotjaGi4g1v0139100
GO terms
4
LotjaGi4g1v0139100.5
– Structural maintenance of chromosomes protein; TAIR: AT5G48600.2 structural maintenance of chromosome 3; Swiss-Prot: sp|Q9FJL0|SMC4_ARATH Structural maintenance of chromosomes protein 4; TrEMBL-Plants: tr|A0A151RK13|A0A151RK13_CAJCA Structural maintenance of chromosomes protein 4; Found in the gene: LotjaGi4g1v0139100
GO terms
4
LotjaGi4g1v0139100.6
– Structural maintenance of chromosomes protein; TAIR: AT5G48600.2 structural maintenance of chromosome 3; Swiss-Prot: sp|Q9FJL0|SMC4_ARATH Structural maintenance of chromosomes protein 4; TrEMBL-Plants: tr|K7LXH6|K7LXH6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0139100
GO terms
4
LotjaGi5g1v0067100.1
– DNA topoisomerase family protein; TAIR: AT4G31210.1 DNA topoisomerase, type IA, core; Swiss-Prot: sp|Q4UM42|TOP1_RICFE DNA topoisomerase 1; TrEMBL-Plants: tr|K7M6M6|K7M6M6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0067100
GO terms
4
LotjaGi5g1v0067100.2
– DNA topoisomerase family protein; TAIR: AT4G31210.1 DNA topoisomerase, type IA, core; Swiss-Prot: sp|Q4UM42|TOP1_RICFE DNA topoisomerase 1; TrEMBL-Plants: tr|K7M6M6|K7M6M6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0067100
GO terms
4
LotjaGi5g1v0072800.1
– DNA topoisomerase 6 subunit A; TAIR: AT5G02820.1 Spo11/DNA topoisomerase VI, subunit A protein; Swiss-Prot: sp|Q9LZ03|TOP6A_ARATH DNA topoisomerase 6 subunit A; TrEMBL-Plants: tr|A0A068F783|A0A068F783_LOTJA DNA topoisomerase 6 subunit A; Found in the gene: LotjaGi5g1v0072800
GO terms
9
LotjaGi5g1v0181700.3
– Structural maintenance of chromosomes protein; TAIR: AT3G54670.1 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp|Q6Q1P4|SMC1_ARATH Structural maintenance of chromosomes protein 1; TrEMBL-Plants: tr|A0A0B2P8J7|A0A0B2P8J7_GLYSO Structural maintenance of chromosomes protein; Found in the gene: LotjaGi5g1v0181700
GO terms
4
LotjaGi5g1v0181700.4
– Structural maintenance of chromosomes protein; TAIR: AT3G54670.1 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp|Q6Q1P4|SMC1_ARATH Structural maintenance of chromosomes protein 1; TrEMBL-Plants: tr|I1LYK3|I1LYK3_SOYBN Structural maintenance of chromosomes protein; Found in the gene: LotjaGi5g1v0181700
GO terms
4
LotjaGi5g1v0181700.5
– Structural maintenance of chromosomes protein; TAIR: AT3G54670.1 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp|Q6Q1P4|SMC1_ARATH Structural maintenance of chromosomes protein 1; TrEMBL-Plants: tr|A0A0S3SR98|A0A0S3SR98_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0181700
GO terms
4
LotjaGi6g1v0346800.1
– DNA topoisomerase 6 subunit A; TAIR: AT5G02820.1 Spo11/DNA topoisomerase VI, subunit A protein; Swiss-Prot: sp|A2XFC1|TOP6A_ORYSI DNA topoisomerase 6 subunit A3; TrEMBL-Plants: tr|I1H6P7|I1H6P7_BRADI DNA topoisomerase 6 subunit A; Found in the gene: LotjaGi6g1v0346800
GO terms
9

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
GO:0016889
Molecular function Endodeoxyribonuclease activity, producing 3'-phosphomonoesters 1 1.79