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| Field | Value |
|---|---|
| Gene ID | Lj3g3v3690060 |
| Transcript ID | Lj3g3v3690060.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PHD finger family protein isoform 1 [Theobroma cacao] gi|508704765|gb|EOX96661.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 386 | 386 | 3.10E-128 | – | |
| SUPERFAMILY | 127 | 188 | 62 | 1.37E-06 | ||
| Gene3D | 132 | 188 | 57 | 3.30E-06 | ||
| ProSiteProfiles | 132 | 190 | 59 | 9.597 | ||
| SMART | 134 | 188 | 55 | 0.073 | ||
| ProSitePatterns | 135 | 187 | 53 | – | ||
| SUPERFAMILY | 179 | 240 | 62 | 2.44E-09 | ||
| SMART | 189 | 235 | 47 | 2.00E-06 | ||
| Gene3D | 190 | 236 | 47 | 7.10E-10 | ||
| ProSitePatterns | 260 | 326 | 67 | – | ||
| ProSiteProfiles | 270 | 329 | 60 | 9.214 | ||
| SUPERFAMILY | 270 | 328 | 59 | 7.97E-08 | ||
| Gene3D | 271 | 327 | 57 | 7.70E-08 | ||
| SMART | 272 | 327 | 56 | 3.80E-05 | ||
| MobiDBLite | 403 | 488 | 86 | – | – | |
| MobiDBLite | 520 | 542 | 23 | – | – | |
| MobiDBLite | 597 | 624 | 28 | – | – | |
| MobiDBLite | 670 | 706 | 37 | – | – | |
| MobiDBLite | 729 | 777 | 49 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of Lj3g3v3690060.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v3690060.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.