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| Field | Value |
|---|---|
| Gene ID | Lj3g3v3690100 |
| Transcript ID | Lj3g3v3690100.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: tRNA-dihydrouridine synthase A-like isoform X2 [Cicer arietinum] gi|502146150|ref|XP_004506326.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 18 | 18 | – | – | |
| Phobius | 1 | 3 | 3 | – | – | |
| Phobius | 4 | 13 | 10 | – | – | |
| Phobius | 14 | 18 | 5 | – | – | |
| Phobius | 19 | 399 | 381 | – | – | |
| PANTHER | 55 | 399 | 345 | 1.50E-214 | – | |
| PANTHER | 55 | 399 | 345 | 1.50E-214 | ||
| Gene3D | 57 | 296 | 240 | 5.70E-65 | ||
| SUPERFAMILY | 60 | 360 | 301 | 4.55E-57 | – | |
| CDD | 61 | 294 | 234 | 1.17E-77 | – | |
| Pfam | 63 | 371 | 309 | 1.10E-57 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | TRNA processing | The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group. | ||
| Molecular function | TRNA dihydrouridine synthase activity | Catalysis of the reaction: tRNA-uracil + acceptor = tRNA-dihydrouridine + reduced acceptor. | ||
| Molecular function | Flavin adenine dinucleotide binding | Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of Lj3g3v3690100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v3690100.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.