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Lj3g3v3751960.3

Overview

Field Value
Gene ID Lj3g3v3751960
Transcript ID Lj3g3v3751960.3
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: adenylate kinase-like isoform X4 [Cicer arietinum] gi|502146789|ref|XP_004506608.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.50.300
50 231 182 4.70E-57
IPR027417
Hamap
MF_03172
51 233 183 38.053
IPR006266
SUPERFAMILY
SSF52540
52 233 182 9.02E-35
IPR027417
Hamap
MF_00235
52 231 180 36.726
IPR000850
PANTHER
PTHR23359:SF100
53 231 179 9.00E-96 –
TIGRFAM
TIGR01359
53 230 178 7.70E-73
IPR006266
PANTHER
PTHR23359
53 231 179 9.00E-96
IPR000850
CDD
cd01428
55 222 168 9.02E-64
IPR000850
PRINTS
PR00094
55 68 14 2.00E-28
IPR000850
Pfam
PF00406
56 208 153 2.80E-46 –
PRINTS
PR00094
83 97 15 2.00E-28
IPR000850
PRINTS
PR00094
131 147 17 2.00E-28
IPR000850
ProSitePatterns
PS00113
131 142 12 –
IPR033690
PRINTS
PR00094
178 193 16 2.00E-28
IPR000850
PRINTS
PR00094
195 209 15 2.00E-28
IPR000850

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004127
Molecular function Cytidylate kinase activity Catalysis of the reaction: ATP + (d)CMP = ADP + (d)CDP.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006139
Biological process Nucleobase-containing compound metabolic process Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids.
Subterm of
GO:0006207
Biological process 'de novo' pyrimidine nucleobase biosynthetic process The chemical reactions and pathways resulting in the formation of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases, beginning with the synthesis of a pyrimidine ring from simpler precursors.
Subterm of
GO:0006221
Biological process Pyrimidine nucleotide biosynthetic process The chemical reactions and pathways resulting in the formation of a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Subterm of
GO:0009041
Molecular function Uridylate kinase activity Catalysis of the reaction: ATP + (d)UMP = ADP + (d)UDP.
Subterm of
GO:0019205
Molecular function Nucleobase-containing compound kinase activity Catalysis of the transfer of a phosphate group, usually from ATP or GTP, to a nucleobase, nucleoside, nucleotide or polynucleotide substrate.
Subterm of

Genome browser

LORE1 insertions 39

Expression data

Expression pattern

Expression pattern of Lj3g3v3751960.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3751960.3, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.