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| Field | Value |
|---|---|
| Gene ID | Lj4g3v0012160 |
| Transcript ID | Lj4g3v0012160.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: probable peptide/nitrate transporter At1g59740-like [Glycine max] gi|356522117|ref|XP_003529696.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 35 | 35 | – | – | |
| PANTHER | 16 | 578 | 563 | 0 | ||
| PANTHER | 16 | 578 | 563 | 0 | – | |
| SUPERFAMILY | 24 | 126 | 103 | 9.59E-24 | ||
| Phobius | 36 | 63 | 28 | – | – | |
| CDD | 37 | 242 | 206 | 1.85E-04 | ||
| Gene3D | 38 | 242 | 205 | 8.00E-11 | – | |
| TMHMM | 38 | 60 | 23 | – | – | |
| Phobius | 64 | 74 | 11 | – | – | |
| Phobius | 75 | 93 | 19 | – | – | |
| TMHMM | 75 | 93 | 19 | – | – | |
| ProSitePatterns | 90 | 114 | 25 | – | ||
| Phobius | 94 | 98 | 5 | – | – | |
| TMHMM | 98 | 120 | 23 | – | – | |
| Phobius | 99 | 120 | 22 | – | – | |
| Pfam | 101 | 521 | 421 | 4.40E-96 | ||
| Phobius | 121 | 153 | 33 | – | – | |
| TMHMM | 152 | 174 | 23 | – | – | |
| Phobius | 154 | 175 | 22 | – | – | |
| SUPERFAMILY | 155 | 255 | 101 | 9.59E-24 | ||
| Phobius | 176 | 194 | 19 | – | – | |
| TMHMM | 195 | 217 | 23 | – | – | |
| Phobius | 195 | 217 | 23 | – | – | |
| Phobius | 218 | 228 | 11 | – | – | |
| TMHMM | 227 | 249 | 23 | – | – | |
| Phobius | 229 | 248 | 20 | – | – | |
| Phobius | 249 | 253 | 5 | – | – | |
| Phobius | 254 | 270 | 17 | – | – | |
| Phobius | 271 | 332 | 62 | – | – | |
| SUPERFAMILY | 309 | 561 | 253 | 9.59E-24 | ||
| TMHMM | 333 | 355 | 23 | – | – | |
| Phobius | 333 | 354 | 22 | – | – | |
| Gene3D | 334 | 559 | 226 | 5.60E-04 | – | |
| Phobius | 355 | 382 | 28 | – | – | |
| TMHMM | 380 | 402 | 23 | – | – | |
| Phobius | 383 | 403 | 21 | – | – | |
| Phobius | 404 | 414 | 11 | – | – | |
| TMHMM | 414 | 436 | 23 | – | – | |
| Phobius | 415 | 436 | 22 | – | – | |
| Phobius | 437 | 455 | 19 | – | – | |
| Phobius | 456 | 479 | 24 | – | – | |
| TMHMM | 456 | 478 | 23 | – | – | |
| Phobius | 480 | 487 | 8 | – | – | |
| Phobius | 488 | 512 | 25 | – | – | |
| TMHMM | 490 | 512 | 23 | – | – | |
| Phobius | 513 | 537 | 25 | – | – | |
| Phobius | 538 | 557 | 20 | – | – | |
| TMHMM | 538 | 560 | 23 | – | – | |
| Phobius | 558 | 587 | 30 | – | – | |
| MobiDBLite | 565 | 587 | 23 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Oligopeptide transport | The directed movement of oligopeptides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj4g3v0012160.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v0012160.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.