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Lj4g3v0096270.1

Overview

Field Value
Gene ID Lj4g3v0096270
Transcript ID Lj4g3v0096270.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: DEAD-box ATP-dependent RNA helicase 21-like [Cicer arietinum] gi|502149572|ref|XP_004507582.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 67 67 – –
PANTHER
PTHR24031
18 58 41 2.00E-201 –
PANTHER
PTHR24031
79 510 432 2.00E-201 –
Gene3D
G3DSA:3.40.50.300
99 347 249 1.10E-83
IPR027417
ProSiteProfiles
PS51195
116 144 29 11.049
IPR014014
CDD
cd00268
118 343 226 3.66E-90 –
SMART
SM00487
135 357 223 4.00E-62
IPR014001
Pfam
PF00270
141 331 191 1.80E-50
IPR011545
ProSiteProfiles
PS51192
147 342 196 30.767
IPR014001
SUPERFAMILY
SSF52540
192 495 304 1.33E-77
IPR027417
ProSitePatterns
PS00039
271 279 9 –
IPR000629
Gene3D
G3DSA:3.40.50.300
348 510 163 1.20E-56
IPR027417
CDD
cd00079
354 482 129 7.78E-44 –
Pfam
PF00271
366 474 109 4.50E-33
IPR001650
ProSiteProfiles
PS51194
369 513 145 24.8
IPR001650
SMART
SM00490
393 474 82 2.10E-36
IPR001650
MobiDBLite
mobidb-lite
504 536 33 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj4g3v0096270.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v0096270.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.