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| Field | Value |
|---|---|
| Gene ID | Lj4g3v0119590 |
| Transcript ID | Lj4g3v0119590.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357455473|ref|XP_003598017.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| TMHMM | 21 | 43 | 23 | – | – | |
| PANTHER | 35 | 438 | 404 | 8.50E-238 | – | |
| Gene3D | 50 | 85 | 36 | 5.40E-14 | ||
| Pfam | 52 | 99 | 48 | 7.80E-08 | ||
| ProSiteProfiles | 53 | 87 | 35 | 9.284 | ||
| TIGRFAM | 56 | 81 | 26 | 1.20E-05 | ||
| TMHMM | 87 | 109 | 23 | – | – | |
| ProSiteProfiles | 90 | 124 | 35 | 5.612 | ||
| Gene3D | 124 | 192 | 69 | 5.40E-14 | ||
| ProSiteProfiles | 125 | 155 | 31 | 7.618 | ||
| TIGRFAM | 130 | 158 | 29 | 2.10E-04 | ||
| SUPERFAMILY | 136 | 180 | 45 | 5.31E-07 | ||
| Pfam | 155 | 202 | 48 | 2.20E-10 | ||
| ProSiteProfiles | 156 | 190 | 35 | 12.397 | ||
| TIGRFAM | 158 | 191 | 34 | 2.90E-08 | ||
| TMHMM | 193 | 215 | 23 | – | – | |
| ProSiteProfiles | 227 | 257 | 31 | 8.451 | ||
| Gene3D | 228 | 295 | 68 | 5.40E-14 | ||
| Pfam | 257 | 305 | 49 | 2.80E-08 | ||
| ProSiteProfiles | 258 | 292 | 35 | 10.402 | ||
| TIGRFAM | 260 | 294 | 35 | 3.50E-06 | ||
| SUPERFAMILY | 273 | 309 | 37 | 5.31E-07 | ||
| ProSiteProfiles | 294 | 324 | 31 | 6.741 | ||
| ProSiteProfiles | 330 | 360 | 31 | 6.982 | ||
| Pfam | 334 | 358 | 25 | 0.038 | ||
| ProSiteProfiles | 362 | 392 | 31 | 6.555 | ||
| Gene3D | 363 | 415 | 53 | 5.40E-14 | ||
| SUPERFAMILY | 369 | 415 | 47 | 5.31E-07 | ||
| ProSiteProfiles | 396 | 430 | 35 | 7.311 | ||
| MobiDBLite | 418 | 441 | 24 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj4g3v0119590.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v0119590.1, powered by CORGI.
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