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| Field | Value |
|---|---|
| Gene ID | Lj4g3v0151610 |
| Transcript ID | Lj4g3v0151610.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | pentatricopeptide repeat-containing protein [Cucumis melo subsp]. melo] gi|307136214|gb|ADN34051.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 92 | 92 | 7.20E-191 | – | |
| PANTHER | 1 | 92 | 92 | 7.20E-191 | – | |
| ProSiteProfiles | 91 | 126 | 36 | 6.643 | ||
| ProSiteProfiles | 141 | 175 | 35 | 7.651 | ||
| Pfam | 145 | 173 | 29 | 1.1 | ||
| ProSiteProfiles | 176 | 210 | 35 | 7.114 | ||
| PANTHER | 181 | 644 | 464 | 7.20E-191 | – | |
| PANTHER | 181 | 644 | 464 | 7.20E-191 | – | |
| ProSiteProfiles | 211 | 245 | 35 | 9.646 | ||
| TIGRFAM | 214 | 247 | 34 | 8.20E-06 | ||
| Pfam | 242 | 273 | 32 | 3.30E-09 | ||
| ProSiteProfiles | 246 | 276 | 31 | 8.923 | ||
| TIGRFAM | 248 | 273 | 26 | 1.40E-04 | ||
| Pfam | 283 | 332 | 50 | 8.70E-15 | ||
| ProSiteProfiles | 284 | 318 | 35 | 12.54 | ||
| TIGRFAM | 286 | 320 | 35 | 5.20E-07 | ||
| ProSiteProfiles | 319 | 353 | 35 | 12.321 | ||
| Gene3D | 319 | 593 | 275 | 8.50E-08 | ||
| TIGRFAM | 322 | 355 | 34 | 2.40E-09 | ||
| Pfam | 353 | 402 | 50 | 1.40E-13 | ||
| ProSiteProfiles | 354 | 388 | 35 | 10.709 | ||
| TIGRFAM | 356 | 389 | 34 | 1.00E-06 | ||
| SUPERFAMILY | 363 | 594 | 232 | 1.26E-07 | – | |
| ProSiteProfiles | 389 | 423 | 35 | 9.251 | ||
| ProSiteProfiles | 424 | 458 | 35 | 10.282 | ||
| Pfam | 424 | 472 | 49 | 2.00E-09 | ||
| TIGRFAM | 427 | 460 | 34 | 8.50E-05 | ||
| ProSiteProfiles | 459 | 493 | 35 | 9.854 | ||
| TIGRFAM | 464 | 494 | 31 | 4.30E-05 | ||
| ProSiteProfiles | 494 | 524 | 31 | 8.561 | ||
| TIGRFAM | 497 | 526 | 30 | 9.20E-04 | ||
| Pfam | 497 | 525 | 29 | 0.049 | ||
| ProSiteProfiles | 528 | 562 | 35 | 11.838 | ||
| Pfam | 528 | 576 | 49 | 1.70E-14 | ||
| TIGRFAM | 531 | 563 | 33 | 2.20E-06 | ||
| ProSiteProfiles | 563 | 597 | 35 | 12.77 | ||
| TIGRFAM | 565 | 599 | 35 | 7.70E-10 | ||
| Pfam | 597 | 640 | 44 | 6.00E-08 | ||
| ProSiteProfiles | 598 | 632 | 35 | 9.821 | ||
| TIGRFAM | 600 | 633 | 34 | 0.001 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj4g3v0151610.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v0151610.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.