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| Field | Value |
|---|---|
| Gene ID | Lj4g3v0229870 |
| Transcript ID | Lj4g3v0229870.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At4g39530-like [Cicer arietinum] gi|502141827|ref|XP_004504658.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 143 | 143 | 1.80E-298 | – | |
| PANTHER | 1 | 143 | 143 | 1.80E-298 | – | |
| Pfam | 5 | 47 | 43 | 1.00E-07 | ||
| ProSiteProfiles | 5 | 39 | 35 | 10.665 | ||
| TIGRFAM | 7 | 40 | 34 | 2.00E-04 | ||
| ProSiteProfiles | 40 | 74 | 35 | 5.678 | ||
| ProSiteProfiles | 75 | 105 | 31 | 5.316 | ||
| ProSiteProfiles | 108 | 142 | 35 | 10.063 | ||
| TIGRFAM | 112 | 144 | 33 | 9.70E-08 | ||
| Pfam | 112 | 153 | 42 | 4.90E-10 | ||
| Gene3D | 176 | 342 | 167 | 2.60E-11 | ||
| ProSiteProfiles | 179 | 209 | 31 | 7.191 | ||
| PANTHER | 180 | 489 | 310 | 1.80E-298 | – | |
| PANTHER | 180 | 489 | 310 | 1.80E-298 | – | |
| SUPERFAMILY | 182 | 459 | 278 | 5.84E-08 | ||
| Pfam | 209 | 256 | 48 | 1.40E-11 | ||
| ProSiteProfiles | 210 | 244 | 35 | 11.937 | ||
| TIGRFAM | 212 | 245 | 34 | 3.60E-08 | ||
| ProSiteProfiles | 245 | 279 | 35 | 5.393 | ||
| ProSiteProfiles | 280 | 310 | 31 | 7.235 | ||
| Pfam | 285 | 307 | 23 | 0.0042 | ||
| Pfam | 310 | 357 | 48 | 1.10E-09 | ||
| ProSiteProfiles | 311 | 345 | 35 | 11.718 | ||
| TIGRFAM | 313 | 340 | 28 | 1.60E-06 | ||
| ProSiteProfiles | 346 | 376 | 31 | 7.487 | ||
| ProSiteProfiles | 382 | 416 | 35 | 6.84 | ||
| Pfam | 386 | 409 | 24 | 0.2 | ||
| Gene3D | 412 | 470 | 59 | 2.60E-11 | ||
| ProSiteProfiles | 448 | 482 | 35 | 8.309 | ||
| Pfam | 451 | 480 | 30 | 0.81 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj4g3v0229870.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v0229870.1, powered by CORGI.
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