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| Field | Value |
|---|---|
| Gene ID | Lj4g3v0244000 |
| Transcript ID | Lj4g3v0244000.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At2g41080-like [Glycine max] gi|356528130|ref|XP_003532658.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 38 | 537 | 500 | 0 | – | |
| PANTHER | 38 | 537 | 500 | 0 | – | |
| ProSiteProfiles | 60 | 94 | 35 | 5.821 | ||
| ProSiteProfiles | 95 | 125 | 31 | 8.232 | ||
| Gene3D | 100 | 156 | 57 | 6.10E-12 | ||
| TIGRFAM | 100 | 127 | 28 | 0.0024 | ||
| Pfam | 100 | 127 | 28 | 8.00E-04 | ||
| SUPERFAMILY | 106 | 150 | 45 | 1.49E-05 | ||
| ProSiteProfiles | 126 | 160 | 35 | 10.841 | ||
| TIGRFAM | 129 | 158 | 30 | 1.60E-06 | ||
| Pfam | 157 | 204 | 48 | 9.50E-08 | ||
| ProSiteProfiles | 161 | 191 | 31 | 6.993 | ||
| ProSiteProfiles | 192 | 226 | 35 | 6.478 | ||
| ProSiteProfiles | 227 | 257 | 31 | 5.678 | ||
| ProSiteProfiles | 258 | 292 | 35 | 9.065 | ||
| Pfam | 260 | 290 | 31 | 0.05 | ||
| ProSiteProfiles | 293 | 327 | 35 | 6.237 | ||
| ProSiteProfiles | 328 | 358 | 31 | 5.59 | ||
| Gene3D | 331 | 390 | 60 | 6.10E-12 | ||
| ProSiteProfiles | 359 | 393 | 35 | 10.38 | ||
| Pfam | 359 | 405 | 47 | 3.20E-10 | ||
| TIGRFAM | 361 | 392 | 32 | 5.90E-04 | ||
| ProSiteProfiles | 394 | 424 | 31 | 8.298 | ||
| ProSiteProfiles | 430 | 460 | 31 | 6.862 | ||
| Pfam | 433 | 458 | 26 | 0.014 | ||
| Gene3D | 460 | 519 | 60 | 6.10E-12 | ||
| ProSiteProfiles | 462 | 492 | 31 | 5.974 | ||
| SUPERFAMILY | 477 | 513 | 37 | 1.49E-05 | ||
| ProSiteProfiles | 496 | 530 | 35 | 6.741 | ||
| Pfam | 532 | 656 | 125 | 4.10E-42 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj4g3v0244000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v0244000.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.