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| Field | Value |
|---|---|
| Gene ID | Lj4g3v0286120 |
| Transcript ID | Lj4g3v0286120.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: small RNA 2'-O-methyltransferase-like [Glycine max] gi|356510770|ref|XP_003524107.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 18 | 937 | 920 | 0 | ||
| SUPERFAMILY | 56 | 97 | 42 | 1.44E-05 | – | |
| Gene3D | 58 | 92 | 35 | 3.90E-04 | ||
| SUPERFAMILY | 557 | 638 | 82 | 7.46E-05 | – | |
| Gene3D | 558 | 653 | 96 | 1.20E-05 | – | |
| SUPERFAMILY | 690 | 879 | 190 | 1.27E-14 | ||
| Gene3D | 697 | 879 | 183 | 1.60E-15 | ||
| Pfam | 709 | 828 | 120 | 2.60E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | RNA methylation | Posttranscriptional addition of a methyl group to either a nucleotide or 2'-O ribose in a polyribonucleotide. Usually uses S-adenosylmethionine as a cofactor. | ||
| Molecular function | O-methyltransferase activity | Catalysis of the transfer of a methyl group to the oxygen atom of an acceptor molecule. | ||
| Molecular function | RNA methyltransferase activity | Catalysis of the transfer of a methyl group from a donor to a nucleoside residue in an RNA molecule. |
Expression pattern of Lj4g3v0286120.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v0286120.1, powered by CORGI.
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