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| Field | Value |
|---|---|
| Gene ID | Lj4g3v0300480 |
| Transcript ID | Lj4g3v0300480.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera] gi|225446327|ref|XP_002273773.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 578 | 578 | – | – | |
| MobiDBLite | 46 | 69 | 24 | – | – | |
| PANTHER | 153 | 732 | 580 | 2.00E-175 | ||
| PANTHER | 153 | 732 | 580 | 2.00E-175 | – | |
| Gene3D | 160 | 530 | 371 | 6.50E-56 | ||
| Pfam | 163 | 221 | 59 | 4.90E-08 | ||
| ProSiteProfiles | 166 | 530 | 365 | 38.541 | ||
| SMART | 166 | 196 | 31 | 0.39 | ||
| CDD | 167 | 313 | 147 | 1.81E-15 | – | |
| SUPERFAMILY | 167 | 532 | 366 | 1.15E-34 | ||
| SMART | 200 | 230 | 31 | 16 | ||
| ProSiteProfiles | 200 | 221 | 22 | 9.057 | ||
| SMART | 252 | 282 | 31 | 0.031 | ||
| SMART | 295 | 324 | 30 | 2600 | ||
| Pfam | 302 | 387 | 86 | 3.90E-07 | ||
| SMART | 329 | 359 | 31 | 290 | ||
| CDD | 361 | 496 | 136 | 3.21E-29 | – | |
| SMART | 363 | 392 | 30 | 0.074 | ||
| SMART | 397 | 428 | 32 | 0.36 | ||
| ProSiteProfiles | 397 | 429 | 33 | 8.763 | ||
| Pfam | 402 | 504 | 103 | 3.30E-12 | ||
| ProSiteProfiles | 433 | 465 | 33 | 9.805 | ||
| SMART | 433 | 462 | 30 | 0.074 | ||
| SMART | 476 | 506 | 31 | 16 | ||
| Pfam | 572 | 680 | 109 | 1.30E-21 | ||
| Phobius | 579 | 598 | 20 | – | – | |
| TMHMM | 579 | 601 | 23 | – | – | |
| Phobius | 599 | 617 | 19 | – | – | |
| Phobius | 618 | 646 | 29 | – | – | |
| TMHMM | 622 | 644 | 23 | – | – | |
| Phobius | 647 | 657 | 11 | – | – | |
| Phobius | 658 | 680 | 23 | – | – | |
| TMHMM | 659 | 681 | 23 | – | – | |
| Phobius | 681 | 691 | 11 | – | – | |
| TMHMM | 690 | 712 | 23 | – | – | |
| Phobius | 692 | 712 | 21 | – | – | |
| Phobius | 713 | 718 | 6 | – | – | |
| Phobius | 719 | 736 | 18 | – | – | |
| Phobius | 737 | 741 | 5 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Regulation of defense response | Any process that modulates the frequency, rate or extent of a defense response. | ||
| Biological process | Cellular response to salicylic acid stimulus | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a salicylic acid stimulus. | ||
| Biological process | Regulation of salicylic acid mediated signaling pathway | Any process that modulates the frequency, rate or extent of salicylic acid mediated signaling pathway. |
Expression pattern of Lj4g3v0300480.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v0300480.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.