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Lj4g3v0336850.2

Overview

Field Value
Gene ID Lj4g3v0336850
Transcript ID Lj4g3v0336850.2
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: dynamin-like protein ARC5-like [Glycine max] gi|356524868|ref|XP_003531050.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SMART
SM00053
7 247 241 9.70E-06
IPR001401
PANTHER
PTHR11566
7 380 374 0
IPR022812
PANTHER
PTHR11566:SF78
7 380 374 0 –
SUPERFAMILY
SSF52540
9 238 230 6.48E-39
IPR027417
Gene3D
G3DSA:3.40.50.300
11 335 325 3.70E-61
IPR027417
ProSiteProfiles
PS51718
29 326 298 59.523
IPR030381
CDD
cd08771
30 326 297 1.12E-65 –
PRINTS
PR00195
32 50 19 1.20E-12
IPR022812
Pfam
PF00350
35 215 181 1.20E-30
IPR022812
PRINTS
PR00195
57 74 18 1.20E-12
IPR022812
PRINTS
PR00195
133 150 18 1.20E-12
IPR022812
PRINTS
PR00195
204 220 17 1.20E-12
IPR022812
SUPERFAMILY
SSF52540
270 334 65 6.48E-39
IPR027417
PANTHER
PTHR11566
413 584 172 0
IPR022812
PANTHER
PTHR11566:SF78
413 584 172 0 –
MobiDBLite
mobidb-lite
591 624 34 – –
PANTHER
PTHR11566
666 747 82 0
IPR022812
PANTHER
PTHR11566:SF78
666 747 82 0 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

Genome browser

LORE1 insertions 30

Expression data

Expression pattern

Expression pattern of Lj4g3v0336850.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v0336850.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.