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Lj4g3v0365560.1

Overview

Field Value
Gene ID Lj4g3v0365560
Transcript ID Lj4g3v0365560.1
Lotus japonicus genome version MG20 v3.0
Description RING-H2 finger protein ATL1O [Medicago truncatula] gi|357476255|ref|XP_003608413.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 53 53 – –
PANTHER
PTHR14155:SF101
8 218 211 4.20E-87 –
PANTHER
PTHR14155
8 218 211 4.20E-87 –
Phobius
TRANSMEMBRANE
54 80 27 – –
TMHMM
TMhelix
54 76 23 – –
Phobius
CYTOPLASMIC_DOMAIN
81 359 279 – –
SUPERFAMILY
SSF57850
145 199 55 2.30E-21 –
Gene3D
G3DSA:3.30.40.10
148 196 49 1.10E-20
IPR013083
CDD
cd00162
150 196 47 2.87E-09 –
Pfam
PF13639
150 193 44 2.80E-13
IPR001841
ProSiteProfiles
PS50089
151 193 43 12.711
IPR001841
SMART
SM00184
151 192 42 8.50E-08
IPR001841
MobiDBLite
mobidb-lite
216 259 44 – –
MobiDBLite
mobidb-lite
300 334 35 – –
MobiDBLite
mobidb-lite
340 359 20 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj4g3v0365560.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v0365560.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.