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| Field | Value |
|---|---|
| Gene ID | Lj4g3v0423220 |
| Transcript ID | Lj4g3v0423220.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At1g55890, mitochondrial-like [Glycine max] gi|356521277|ref|XP_003529283.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 23 | 23 | – | – | |
| Phobius | 1 | 23 | 23 | – | – | |
| Phobius | 1 | 7 | 7 | – | – | |
| Phobius | 8 | 18 | 11 | – | – | |
| Phobius | 19 | 23 | 5 | – | – | |
| Phobius | 24 | 387 | 364 | – | – | |
| PANTHER | 37 | 373 | 337 | 1.20E-162 | – | |
| PANTHER | 37 | 373 | 337 | 1.20E-162 | – | |
| ProSiteProfiles | 95 | 129 | 35 | 7.936 | ||
| Gene3D | 101 | 333 | 233 | 8.80E-04 | ||
| Pfam | 102 | 127 | 26 | 6.60E-05 | ||
| TIGRFAM | 102 | 129 | 28 | 6.20E-05 | ||
| ProSiteProfiles | 130 | 160 | 31 | 6.665 | ||
| Pfam | 133 | 156 | 24 | 1.2 | ||
| Pfam | 165 | 212 | 48 | 9.40E-17 | ||
| ProSiteProfiles | 166 | 200 | 35 | 13.34 | ||
| TIGRFAM | 168 | 201 | 34 | 1.40E-10 | ||
| ProSiteProfiles | 201 | 235 | 35 | 11.444 | ||
| TIGRFAM | 203 | 237 | 35 | 1.30E-06 | ||
| ProSiteProfiles | 236 | 270 | 35 | 10.095 | ||
| Pfam | 239 | 267 | 29 | 0.036 | ||
| TIGRFAM | 239 | 271 | 33 | 1.80E-04 | ||
| Pfam | 270 | 318 | 49 | 2.30E-08 | ||
| ProSiteProfiles | 271 | 305 | 35 | 10.249 | ||
| TIGRFAM | 274 | 306 | 33 | 8.90E-05 | ||
| ProSiteProfiles | 306 | 340 | 35 | 7.826 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj4g3v0423220.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v0423220.1, powered by CORGI.
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