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| Field | Value |
|---|---|
| Gene ID | Lj4g3v0450540 |
| Transcript ID | Lj4g3v0450540.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Cicer arietinum] gi|502155091|ref|XP_004509956.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 490 | 490 | 0 | – | |
| PANTHER | 1 | 490 | 490 | 0 | – | |
| ProSiteProfiles | 15 | 49 | 35 | 8.813 | ||
| Pfam | 18 | 44 | 27 | 0.03 | ||
| ProSiteProfiles | 51 | 85 | 35 | 7.125 | ||
| ProSiteProfiles | 86 | 120 | 35 | 9.624 | ||
| TIGRFAM | 89 | 119 | 31 | 5.40E-04 | ||
| Pfam | 90 | 118 | 29 | 0.002 | ||
| Pfam | 119 | 143 | 25 | 0.035 | ||
| ProSiteProfiles | 148 | 182 | 35 | 10.468 | ||
| TIGRFAM | 150 | 179 | 30 | 4.80E-05 | ||
| Pfam | 150 | 179 | 30 | 1.40E-05 | ||
| Gene3D | 159 | 343 | 185 | 1.50E-12 | ||
| Pfam | 182 | 211 | 30 | 7.80E-06 | ||
| TIGRFAM | 182 | 211 | 30 | 3.20E-06 | ||
| ProSiteProfiles | 183 | 209 | 27 | 6.993 | ||
| SUPERFAMILY | 209 | 234 | 26 | 4.43E-06 | ||
| ProSiteProfiles | 210 | 244 | 35 | 11.685 | ||
| TIGRFAM | 212 | 246 | 35 | 8.80E-09 | ||
| Pfam | 212 | 241 | 30 | 6.20E-08 | ||
| ProSiteProfiles | 246 | 280 | 35 | 5.601 | ||
| ProSiteProfiles | 281 | 311 | 31 | 7.333 | ||
| ProSiteProfiles | 312 | 346 | 35 | 11.992 | ||
| Pfam | 312 | 358 | 47 | 3.90E-11 | ||
| TIGRFAM | 314 | 347 | 34 | 8.00E-09 | ||
| ProSiteProfiles | 347 | 377 | 31 | 6.599 | ||
| ProSiteProfiles | 383 | 413 | 31 | 6.478 | ||
| Pfam | 386 | 411 | 26 | 0.26 | ||
| SUPERFAMILY | 398 | 468 | 71 | 4.43E-06 | ||
| Gene3D | 413 | 468 | 56 | 1.50E-12 | ||
| ProSiteProfiles | 415 | 445 | 31 | 6.237 | ||
| ProSiteProfiles | 449 | 483 | 35 | 6.467 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj4g3v0450540.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v0450540.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.