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| Field | Value |
|---|---|
| Gene ID | Lj4g3v0451210 |
| Transcript ID | Lj4g3v0451210.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At2g33760-like [Glycine max] gi|356546233|ref|XP_003541534.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 458 | 458 | 4.10E-281 | – | |
| PANTHER | 1 | 458 | 458 | 4.10E-281 | – | |
| ProSiteProfiles | 77 | 111 | 35 | 7.914 | ||
| ProSiteProfiles | 147 | 177 | 31 | 6.314 | ||
| SUPERFAMILY | 177 | 215 | 39 | 1.74E-06 | ||
| Gene3D | 178 | 299 | 122 | 4.10E-07 | ||
| ProSiteProfiles | 178 | 212 | 35 | 13.033 | ||
| Pfam | 178 | 224 | 47 | 1.90E-12 | ||
| TIGRFAM | 180 | 214 | 35 | 8.60E-09 | ||
| ProSiteProfiles | 213 | 247 | 35 | 7.355 | ||
| ProSiteProfiles | 248 | 278 | 31 | 8.188 | ||
| Pfam | 253 | 277 | 25 | 0.0031 | ||
| ProSiteProfiles | 279 | 313 | 35 | 11.772 | ||
| Pfam | 279 | 326 | 48 | 2.50E-13 | ||
| TIGRFAM | 282 | 314 | 33 | 9.60E-08 | ||
| ProSiteProfiles | 314 | 349 | 36 | 8.506 | ||
| TIGRFAM | 316 | 350 | 35 | 7.20E-05 | ||
| ProSiteProfiles | 350 | 384 | 35 | 6.895 | ||
| SUPERFAMILY | 361 | 436 | 76 | 1.74E-06 | ||
| Gene3D | 368 | 440 | 73 | 4.10E-07 | ||
| ProSiteProfiles | 417 | 451 | 35 | 7.925 | ||
| Pfam | 421 | 449 | 29 | 0.62 | ||
| Pfam | 454 | 577 | 124 | 1.60E-38 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj4g3v0451210.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v0451210.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.