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Lj4g3v0654460.1

Overview

Field Value
Gene ID Lj4g3v0654460
Transcript ID Lj4g3v0654460.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: glycine cleavage system H protein, mitochondrial-like [Cicer arietinum] gi|502143341|ref|XP_004505304.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11715:SF9
1 155 155 9.40E-121 –
PANTHER
PTHR11715
1 155 155 9.40E-121
IPR002930
SUPERFAMILY
SSF51230
27 150 124 2.22E-46
IPR011053
TIGRFAM
TIGR00527
28 152 125 6.40E-51
IPR017453
Hamap
MF_00272
28 149 122 29.324
IPR002930
Gene3D
G3DSA:2.40.50.100
29 151 123 1.30E-56 –
Pfam
PF01597
31 150 120 1.70E-48
IPR033753
CDD
cd06848
33 127 95 2.99E-50
IPR002930
ProSiteProfiles
PS50968
46 128 83 29.959
IPR000089
ProSitePatterns
PS00189
71 100 30 –
IPR003016

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005960
Cellular component Glycine cleavage complex A protein complex that catalyzes the reversible oxidation of glycine. In E. coli, it has four components: dihydrolipoamide dehydrogenase, glycine dehydrogenase (decarboxylating), lipoyl-GcvH-protein and aminomethyltransferase, also known as L, P, H, and T.
Subterm of
GO:0019464
Biological process Glycine decarboxylation via glycine cleavage system The chemical reactions and pathways resulting in the breakdown of glycine by oxidative cleavage to carbon dioxide, ammonia, and a methylene group, mediated by enzymes of the glycine cleavage complex.
Subterm of

Genome browser

LORE1 insertions 13

Expression data

Expression pattern

Expression pattern of Lj4g3v0654460.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v0654460.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.