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| Field | Value |
|---|---|
| Gene ID | Lj4g3v0877830 |
| Transcript ID | Lj4g3v0877830.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: DNA topoisomerase 2-like [Cicer arietinum] gi|502128025|ref|XP_004499912.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 365 | 365 | 9.50E-191 | – | |
| PANTHER | 1 | 365 | 365 | 9.50E-191 | – | |
| ProSiteProfiles | 1 | 48 | 48 | 9.938 | ||
| SUPERFAMILY | 2 | 362 | 361 | 4.97E-126 | ||
| Gene3D | 2 | 70 | 69 | 4.20E-17 | ||
| PRINTS | 3 | 19 | 17 | 1.50E-18 | ||
| PRINTS | 21 | 38 | 18 | 1.50E-18 | ||
| PRINTS | 22 | 37 | 16 | 1.40E-43 | ||
| PRINTS | 42 | 54 | 13 | 1.50E-18 | ||
| PRINTS | 43 | 54 | 12 | 1.40E-43 | ||
| Pfam | 48 | 173 | 126 | 2.20E-32 | ||
| Gene3D | 71 | 103 | 33 | 3.30E-13 | – | |
| PRINTS | 85 | 101 | 17 | 1.50E-18 | ||
| PRINTS | 91 | 103 | 13 | 1.40E-43 | ||
| SMART | 156 | 369 | 214 | 2.40E-13 | ||
| Pfam | 176 | 364 | 189 | 5.60E-73 | ||
| Gene3D | 178 | 359 | 182 | 2.00E-61 | ||
| PRINTS | 204 | 227 | 24 | 1.40E-43 | ||
| PRINTS | 251 | 273 | 23 | 1.40E-43 | ||
| PRINTS | 281 | 301 | 21 | 1.40E-43 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA topoisomerase type II (ATP-hydrolyzing) activity | Catalysis of a DNA topological transformation by transiently cleaving a pair of complementary DNA strands to form a gate through which a second double-stranded DNA segment is passed, after which the severed strands in the first DNA segment are rejoined; product release is coupled to ATP binding and hydrolysis; changes the linking number in multiples of 2. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | DNA metabolic process | Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides. | ||
| Biological process | DNA topological change | The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number. |
Expression pattern of Lj4g3v0877830.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v0877830.1, powered by CORGI.
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