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| Field | Value |
|---|---|
| Gene ID | Lj4g3v1073530 |
| Transcript ID | Lj4g3v1073530.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: U2 snRNP-associated SURP motif-containing protein-like isoform X1 [Cicer arietinum] gi|502154212|ref|XP_004509622.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 582 | 582 | 0 | – | |
| MobiDBLite | 1 | 58 | 58 | – | – | |
| PANTHER | 1 | 582 | 582 | 0 | – | |
| Gene3D | 53 | 142 | 90 | 9.80E-19 | ||
| SUPERFAMILY | 54 | 150 | 97 | 3.76E-20 | ||
| CDD | 60 | 143 | 84 | 2.03E-45 | – | |
| ProSiteProfiles | 61 | 142 | 82 | 14.266 | ||
| SMART | 62 | 138 | 77 | 2.30E-16 | ||
| Pfam | 63 | 135 | 73 | 4.90E-12 | ||
| SUPERFAMILY | 183 | 265 | 83 | 6.15E-20 | ||
| SMART | 208 | 262 | 55 | 1.90E-17 | ||
| Pfam | 208 | 260 | 53 | 5.70E-15 | ||
| ProSiteProfiles | 210 | 253 | 44 | 12.125 | ||
| MobiDBLite | 282 | 320 | 39 | – | – | |
| ProSiteProfiles | 318 | 463 | 146 | 38.025 | ||
| SUPERFAMILY | 322 | 459 | 138 | 1.44E-08 | ||
| Gene3D | 322 | 461 | 140 | 3.10E-08 | ||
| Coils | 323 | 343 | 21 | – | – | |
| SMART | 325 | 460 | 136 | 9.90E-19 | ||
| MobiDBLite | 586 | 698 | 113 | – | – | |
| PANTHER | 634 | 787 | 154 | 0 | – | |
| PANTHER | 634 | 787 | 154 | 0 | – | |
| Pfam | 693 | 740 | 48 | 5.50E-07 | ||
| SMART | 693 | 742 | 50 | 5.40E-10 | ||
| Coils | 694 | 714 | 21 | – | – | |
| Coils | 720 | 740 | 21 | – | – | |
| MobiDBLite | 731 | 787 | 57 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. |
Expression pattern of Lj4g3v1073530.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v1073530.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.