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Lj4g3v1223630.1

Overview

Field Value
Gene ID Lj4g3v1223630
Transcript ID Lj4g3v1223630.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: transcription factor MYB1R1-like [Cicer arietinum] gi|502152469|ref|XP_004508939.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 20 20 – –
PANTHER
PTHR24078:SF280
1 254 254 4.50E-146 –
PANTHER
PTHR24078
1 254 254 4.50E-146 –
Gene3D
G3DSA:4.10.60.10
3 21 19 6.80E-04
IPR001878
MobiDBLite
mobidb-lite
40 101 62 – –
ProSiteProfiles
PS51294
92 148 57 20.018
IPR017930
SUPERFAMILY
SSF46689
94 149 56 1.22E-16
IPR009057
TIGRFAM
TIGR01557
95 147 53 6.90E-19
IPR006447
Gene3D
G3DSA:1.10.10.60
96 142 47 2.10E-11
IPR009057
SMART
SM00717
96 146 51 4.30E-11
IPR001005
Pfam
PF00249
99 143 45 1.10E-10
IPR001005
CDD
cd00167
99 144 46 2.65E-09 –
MobiDBLite
mobidb-lite
186 221 36 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

Genome browser

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj4g3v1223630.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v1223630.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.