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Lj4g3v1287260.1

Overview

Field Value
Gene ID Lj4g3v1287260
Transcript ID Lj4g3v1287260.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: protein FIZZY-RELATED 2-like [Glycine max] gi|356565305|ref|XP_003550882.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 29 29 – –
PANTHER
PTHR19918
1 456 456 1.80E-255
IPR033010
SignalP
SignalP-TM_GRAM_POSITIVE
1 23 23 – –
PANTHER
PTHR19918:SF1
1 456 456 1.80E-255 –
SUPERFAMILY
SSF50978
126 445 320 1.69E-57
IPR017986
Gene3D
G3DSA:2.130.10.10
147 445 299 1.20E-56
IPR015943
SMART
SM00320
148 189 42 460
IPR001680
ProSiteProfiles
PS50294
159 454 296 35.066
IPR017986
SMART
SM00320
191 232 42 0.073
IPR001680
Pfam
PF12894
193 256 64 1.60E-05
IPR024977
ProSiteProfiles
PS50082
207 241 35 8.637
IPR001680
SMART
SM00320
235 272 38 0.034
IPR001680
SMART
SM00320
276 315 40 7.70E-07
IPR001680
Pfam
PF00400
280 315 36 2.60E-05
IPR001680
ProSiteProfiles
PS50082
283 315 33 12.981
IPR001680
SMART
SM00320
318 360 43 0.011
IPR001680
Pfam
PF00400
326 360 35 0.069
IPR001680
ProSitePatterns
PS00678
347 361 15 –
IPR019775
SMART
SM00320
406 445 40 9.50E-07
IPR001680
Pfam
PF00400
409 445 37 2.90E-04
IPR001680
ProSiteProfiles
PS50082
413 446 34 14.285
IPR001680
ProSitePatterns
PS00678
432 446 15 –
IPR019775

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0010997
Molecular function Anaphase-promoting complex binding Interacting selectively and non-covalently with an anaphase-promoting complex. A ubiquitin ligase complex that degrades mitotic cyclins and anaphase inhibitory protein, thereby triggering sister chromatid separation and exit from mitosis.
Subterm of
GO:0097027
Molecular function Ubiquitin-protein transferase activator activity Increases the activity of a ubiquitin-protein transferase, an enzyme that catalyzes the covalent attachment of ubiquitin to lysine in a substrate protein.
Subterm of
GO:1904668
Biological process Positive regulation of ubiquitin protein ligase activity Any process that activates or increases the frequency, rate or extent of ubiquitin protein ligase activity.
Subterm of

Genome browser

LORE1 insertions 11

Expression data

Expression pattern

Expression pattern of Lj4g3v1287260.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v1287260.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.