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| Field | Value |
|---|---|
| Gene ID | Lj4g3v1389340 |
| Transcript ID | Lj4g3v1389340.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: probable pectate lyase 22 isoform 1 [Glycine max] gi|356563159|ref|XP_003549832.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 6 | 6 | – | – | |
| SignalP | 1 | 24 | 24 | – | – | |
| SignalP | 1 | 24 | 24 | – | – | |
| Phobius | 1 | 24 | 24 | – | – | |
| PANTHER | 7 | 407 | 401 | 0 | – | |
| Phobius | 7 | 18 | 12 | – | – | |
| PANTHER | 7 | 407 | 401 | 0 | – | |
| Phobius | 19 | 24 | 6 | – | – | |
| Phobius | 25 | 407 | 383 | – | – | |
| SUPERFAMILY | 38 | 402 | 365 | 2.51E-106 | ||
| Gene3D | 59 | 399 | 341 | 2.50E-138 | ||
| PRINTS | 81 | 98 | 18 | 1.30E-84 | ||
| PRINTS | 105 | 130 | 26 | 1.30E-84 | ||
| SMART | 133 | 330 | 198 | 5.30E-107 | ||
| PRINTS | 141 | 157 | 17 | 1.30E-84 | ||
| Pfam | 143 | 324 | 182 | 1.10E-20 | ||
| PRINTS | 205 | 226 | 22 | 1.30E-84 | ||
| PRINTS | 285 | 304 | 20 | 1.30E-84 | ||
| PRINTS | 307 | 326 | 20 | 1.30E-84 | ||
| PRINTS | 349 | 373 | 25 | 1.30E-84 | ||
| PRINTS | 378 | 401 | 24 | 1.30E-84 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of Lj4g3v1389340.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v1389340.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.