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| Field | Value |
|---|---|
| Gene ID | Lj4g3v1426370 |
| Transcript ID | Lj4g3v1426370.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At3g48250, chloroplastic-like [Glycine max] gi|356564958|ref|XP_003550712.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 33 | 33 | 6.10E-204 | – | |
| PANTHER | 1 | 33 | 33 | 6.10E-204 | – | |
| ProSiteProfiles | 19 | 56 | 38 | 5.031 | ||
| PANTHER | 102 | 207 | 106 | 6.10E-204 | – | |
| PANTHER | 102 | 207 | 106 | 6.10E-204 | – | |
| ProSiteProfiles | 123 | 157 | 35 | 9.35 | ||
| TIGRFAM | 125 | 158 | 34 | 2.50E-04 | ||
| Pfam | 125 | 154 | 30 | 0.036 | ||
| Gene3D | 155 | 358 | 204 | 4.90E-04 | ||
| ProSiteProfiles | 158 | 192 | 35 | 8.353 | ||
| ProSiteProfiles | 230 | 264 | 35 | 9.591 | ||
| TIGRFAM | 239 | 265 | 27 | 0.0014 | ||
| PANTHER | 245 | 457 | 213 | 6.10E-204 | – | |
| PANTHER | 245 | 457 | 213 | 6.10E-204 | – | |
| Pfam | 261 | 293 | 33 | 1.70E-12 | ||
| ProSiteProfiles | 265 | 299 | 35 | 13.132 | ||
| TIGRFAM | 267 | 301 | 35 | 3.90E-10 | ||
| Pfam | 296 | 327 | 32 | 3.00E-07 | ||
| ProSiteProfiles | 300 | 334 | 35 | 11.06 | ||
| TIGRFAM | 303 | 335 | 33 | 2.00E-07 | ||
| ProSiteProfiles | 335 | 370 | 36 | 5.788 | ||
| ProSiteProfiles | 371 | 405 | 35 | 8.1 | ||
| ProSiteProfiles | 437 | 457 | 21 | 5.525 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj4g3v1426370.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v1426370.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.