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Lj4g3v1535190.1

Overview

Field Value
Gene ID Lj4g3v1535190
Transcript ID Lj4g3v1535190.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: protease Do-like 9-like [Cicer arietinum] gi|502152268|ref|XP_004508846.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 49 49 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
1 403 403 – –
PANTHER
PTHR22939
2 476 475 0 –
PANTHER
PTHR22939:SF85
2 476 475 0 –
SUPERFAMILY
SSF50494
77 279 203 8.80E-40
IPR009003
Gene3D
G3DSA:2.40.10.10
100 183 84 2.10E-09 –
Pfam
PF13365
109 246 138 3.80E-18 –
PRINTS
PR00834
110 122 13 6.60E-11
IPR001940
PRINTS
PR00834
138 158 21 6.60E-11
IPR001940
PRINTS
PR00834
180 204 25 6.60E-11
IPR001940
Gene3D
G3DSA:2.40.10.10
184 281 98 2.90E-22 –
PRINTS
PR00834
217 234 18 6.60E-11
IPR001940
CDD
cd00987
285 385 101 5.85E-10 –
Pfam
PF13180
302 387 86 2.40E-07
IPR001478
SUPERFAMILY
SSF50156
310 392 83 5.19E-08
IPR001478
Gene3D
G3DSA:2.30.42.10
310 391 82 2.60E-11
IPR001478
PRINTS
PR00834
326 338 13 6.60E-11
IPR001940
Phobius
TRANSMEMBRANE
404 421 18 – –
Phobius
CYTOPLASMIC_DOMAIN
422 495 74 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004252
Molecular function Serine-type endopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0006508
Biological process Proteolysis The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
Subterm of

Genome browser

LORE1 insertions 17

Expression data

Expression pattern

Expression pattern of Lj4g3v1535190.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v1535190.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.