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| Field | Value |
|---|---|
| Gene ID | Lj4g3v1604460 |
| Transcript ID | Lj4g3v1604460.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | plasma membrane H+-ATPase [Sesbania rostrata] gi|31580855|dbj|BAC77532.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 322 | 322 | – | – | |
| Pfam | 1 | 278 | 278 | 2.80E-18 | – | |
| PANTHER | 1 | 463 | 463 | 0 | – | |
| TIGRFAM | 1 | 486 | 486 | 1.90E-207 | ||
| SUPERFAMILY | 1 | 57 | 57 | 8.93E-39 | ||
| PANTHER | 1 | 463 | 463 | 0 | – | |
| Gene3D | 2 | 19 | 18 | 2.00E-05 | ||
| PRINTS | 5 | 19 | 15 | 1.70E-35 | – | |
| ProSitePatterns | 7 | 13 | 7 | – | ||
| Gene3D | 20 | 163 | 144 | 2.10E-32 | ||
| SUPERFAMILY | 84 | 311 | 228 | 8.93E-39 | ||
| PRINTS | 121 | 139 | 19 | 1.30E-59 | ||
| PRINTS | 159 | 170 | 12 | 1.70E-35 | – | |
| PRINTS | 181 | 191 | 11 | 1.70E-35 | – | |
| Gene3D | 229 | 525 | 297 | 8.20E-102 | ||
| PRINTS | 236 | 252 | 17 | 1.30E-59 | ||
| TIGRFAM | 239 | 352 | 114 | 3.10E-28 | ||
| PRINTS | 264 | 283 | 20 | 1.70E-35 | – | |
| PRINTS | 264 | 280 | 17 | 1.30E-59 | ||
| PRINTS | 287 | 299 | 13 | 1.70E-35 | – | |
| PRINTS | 295 | 320 | 26 | 1.30E-59 | ||
| SUPERFAMILY | 313 | 527 | 215 | 1.96E-32 | – | |
| TMHMM | 323 | 345 | 23 | – | – | |
| Phobius | 323 | 345 | 23 | – | – | |
| Phobius | 346 | 350 | 5 | – | – | |
| Phobius | 351 | 368 | 18 | – | – | |
| Phobius | 369 | 387 | 19 | – | – | |
| TMHMM | 387 | 409 | 23 | – | – | |
| Phobius | 388 | 410 | 23 | – | – | |
| Phobius | 411 | 434 | 24 | – | – | |
| Phobius | 435 | 454 | 20 | – | – | |
| PRINTS | 440 | 461 | 22 | 1.30E-59 | ||
| Phobius | 455 | 465 | 11 | – | – | |
| TMHMM | 465 | 487 | 23 | – | – | |
| Phobius | 466 | 487 | 22 | – | – | |
| Phobius | 488 | 498 | 11 | – | – | |
| TMHMM | 497 | 516 | 20 | – | – | |
| Phobius | 499 | 516 | 18 | – | – | |
| PANTHER | 500 | 597 | 98 | 0 | – | |
| PANTHER | 500 | 597 | 98 | 0 | – | |
| Phobius | 517 | 597 | 81 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Proton-exporting ATPase activity, phosphorylative mechanism | Enables the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) -> ADP + phosphate + H+(out). These transporters use a phosphorylative mechanism, which have a phosphorylated intermediate state during the ion transport cycle. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Proton export across plasma membrane | The directed movement of hydrogen ions (protons) from inside a cell, across the plasma membrane and into the extracellular region. |
Expression pattern of Lj4g3v1604460.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v1604460.3, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.