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Lj4g3v1748320.1

Overview

Field Value
Gene ID Lj4g3v1748320
Transcript ID Lj4g3v1748320.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex subunit 2-like protein-like [Glycine max] gi|356511577|ref|XP_003524501.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF55315
18 127 110 1.23E-30
IPR029064
Gene3D
G3DSA:3.30.1330.30
22 132 111 2.40E-37
IPR029064
PANTHER
PTHR23105
23 152 130 2.60E-88 –
PANTHER
PTHR23105:SF61
23 152 130 2.60E-88 –
PRINTS
PR00883
25 38 14 3.60E-08
IPR002415
PRINTS
PR00883
38 53 16 3.60E-08
IPR002415
Pfam
PF01248
41 124 84 9.10E-23
IPR004038
PRINTS
PR00881
52 66 15 1.00E-12
IPR018492
PRINTS
PR00883
55 65 11 3.60E-08
IPR002415
PRINTS
PR00881
71 84 14 1.00E-12
IPR018492
PRINTS
PR00881
87 97 11 1.00E-12
IPR018492
PRINTS
PR00881
97 111 15 1.00E-12
IPR018492
PRINTS
PR00883
99 111 13 3.60E-08
IPR002415

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0005730
Cellular component Nucleolus A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
Subterm of
Part of

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj4g3v1748320.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v1748320.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.