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| Field | Value |
|---|---|
| Gene ID | Lj4g3v1787060 |
| Transcript ID | Lj4g3v1787060.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Transmembrane Fragile-X-F-associated protein isoform 1 [Theobroma cacao] gi|508773674|gb|EOY20930.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | – | – | |
| PANTHER | 1 | 464 | 464 | 0 | – | |
| TMHMM | 7 | 26 | 20 | – | – | |
| Phobius | 12 | 30 | 19 | – | – | |
| Pfam | 28 | 289 | 262 | 5.00E-95 | ||
| Phobius | 31 | 35 | 5 | – | – | |
| Phobius | 36 | 55 | 20 | – | – | |
| TMHMM | 36 | 53 | 18 | – | – | |
| Phobius | 56 | 75 | 20 | – | – | |
| TMHMM | 74 | 96 | 23 | – | – | |
| Phobius | 76 | 98 | 23 | – | – | |
| Phobius | 99 | 103 | 5 | – | – | |
| TMHMM | 100 | 122 | 23 | – | – | |
| Phobius | 104 | 122 | 19 | – | – | |
| Phobius | 123 | 142 | 20 | – | – | |
| Phobius | 143 | 166 | 24 | – | – | |
| TMHMM | 148 | 167 | 20 | – | – | |
| Phobius | 167 | 177 | 11 | – | – | |
| TMHMM | 177 | 199 | 23 | – | – | |
| Phobius | 178 | 198 | 21 | – | – | |
| Phobius | 199 | 274 | 76 | – | – | |
| TMHMM | 274 | 296 | 23 | – | – | |
| Phobius | 275 | 298 | 24 | – | – | |
| Phobius | 299 | 464 | 166 | – | – | |
| Gene3D | 403 | 458 | 56 | 1.80E-09 | ||
| SUPERFAMILY | 410 | 459 | 50 | 1.77E-07 | – | |
| Pfam | 414 | 456 | 43 | 2.50E-12 | – | |
| ProSiteProfiles | 417 | 452 | 36 | 10.97 | ||
| SMART | 417 | 451 | 35 | 0.0012 | ||
| CDD | 417 | 455 | 39 | 9.84E-05 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of Lj4g3v1787060.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v1787060.1, powered by CORGI.
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