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Lj4g3v1812480.1

Overview

Field Value
Gene ID Lj4g3v1812480
Transcript ID Lj4g3v1812480.1
Lotus japonicus genome version MG20 v3.0
Description histone 2 [Populus trichocarpa] gi|224143081|ref|XP_002324843.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23430
1 129 129 4.80E-104 –
MobiDBLite
mobidb-lite
1 35 35 – –
SUPERFAMILY
SSF47113
11 110 100 4.01E-41
IPR009072
SMART
SM00414
13 133 121 3.80E-71
IPR002119
Pfam
PF00125
14 102 89 9.10E-19
IPR007125
Gene3D
G3DSA:1.10.20.10
16 132 117 1.50E-51
IPR009072
PRINTS
PR00620
24 46 23 9.20E-42
IPR002119
CDD
cd00074
25 129 105 6.55E-55 –
PRINTS
PR00620
54 69 16 9.20E-42
IPR002119
PRINTS
PR00620
69 82 14 9.20E-42
IPR002119
PRINTS
PR00620
83 97 15 9.20E-42
IPR002119
Pfam
PF16211
103 132 30 8.90E-11
IPR032454
PRINTS
PR00620
110 128 19 9.20E-42
IPR002119

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000786
Cellular component Nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
Subterm of
Part of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0046982
Molecular function Protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
Subterm of

Genome browser

LORE1 insertions 11

Expression data

Expression pattern

Expression pattern of Lj4g3v1812480.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v1812480.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.