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Lj4g3v1865760.3

Overview

Field Value
Gene ID Lj4g3v1865760
Transcript ID Lj4g3v1865760.3
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description Nudix hydrolase [Medicago truncatula] gi|357477993|ref|XP_003609282.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Pfam
PF09296
54 170 117 9.80E-10
IPR015375
SUPERFAMILY
SSF55811
157 335 179 6.09E-41
IPR015797
PANTHER
PTHR22769:SF7
164 388 225 3.70E-108 –
PANTHER
PTHR22769
164 388 225 3.70E-108 –
Gene3D
G3DSA:3.90.79.10
170 324 155 2.40E-44
IPR015797
Pfam
PF09297
174 205 32 5.30E-08
IPR015376
ProSiteProfiles
PS51462
206 336 131 18.046
IPR000086
CDD
cd03429
210 384 175 1.64E-55 –
Pfam
PF00293
210 329 120 2.60E-18
IPR000086
PRINTS
PR00502
237 251 15 4.00E-05
IPR020476
ProSitePatterns
PS00893
242 263 22 –
IPR020084
PRINTS
PR00502
251 266 16 4.00E-05
IPR020476
Gene3D
G3DSA:3.90.79.10
365 383 19 2.40E-44
IPR015797

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016787
Molecular function Hydrolase activity Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
Subterm of
GO:0046872
Molecular function Metal ion binding Interacting selectively and non-covalently with any metal ion.
Subterm of

Genome browser

LORE1 insertions 18

Expression data

Expression pattern

Expression pattern of Lj4g3v1865760.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v1865760.3, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.