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Lj4g3v1947730.2

Overview

Field Value
Gene ID Lj4g3v1947730
Transcript ID Lj4g3v1947730.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: F-box/LRR-repeat protein 14-like [Glycine max] gi|356548547|ref|XP_003542662.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 49 60 12 6.00E-170
PANTHER 49 60 12 6.00E-170
Gene3D 72 358 287 1.20E-44
PANTHER 79 180 102 6.00E-170
PANTHER 79 180 102 6.00E-170
SUPERFAMILY 132 443 312 6.50E-46
Pfam 132 152 21 1.4
SMART 155 180 26 5.6
SMART 181 205 25 58
PANTHER 205 493 289 6.00E-170
PANTHER 205 493 289 6.00E-170
SMART 229 254 26 25
SMART 254 280 27 110
SMART 256 278 23 300
Pfam 305 363 59 1.70E-07
SMART 350 383 34 14
SMART 350 374 25 5.4
Gene3D 359 572 214 9.10E-39
SUPERFAMILY 393 558 166 2.07E-22
SMART 398 422 25 19
Pfam 399 420 22 0.3
SMART 423 446 24 280
Pfam 472 532 61 2.50E-06
SMART 494 518 25 240
SMART 519 543 25 0.38
SMART 519 548 30 2.2
PANTHER 560 567 8 6.00E-170
PANTHER 560 567 8 6.00E-170

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

Expression data

Expression pattern

Expression pattern of Lj4g3v1947730.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v1947730.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.