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Lj4g3v1989860.1

Overview

Field Value
Gene ID Lj4g3v1989860
Transcript ID Lj4g3v1989860.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: eukaryotic initiation factor iso-4F subunit p82-34-like isoform 2 [Glycine max] gi|356562557|ref|XP_003549536.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23253
17 665 649 0 –
PANTHER
PTHR23253:SF32
17 665 649 0 –
MobiDBLite
mobidb-lite
38 68 31 – –
SUPERFAMILY
SSF48371
84 319 236 1.27E-66
IPR016024
Pfam
PF02854
91 317 227 2.30E-55
IPR003890
SMART
SM00543
91 317 227 1.30E-56
IPR003890
Gene3D
G3DSA:1.25.40.180
92 334 243 3.70E-73
IPR016021
Coils
Coil
176 206 31 – –
Gene3D
G3DSA:1.25.40.180
495 650 156 2.70E-38
IPR016021
SUPERFAMILY
SSF48371
496 654 159 3.22E-40
IPR016024
ProSiteProfiles
PS51366
500 622 123 24.121
IPR003891
SMART
SM00544
501 613 113 2.80E-33
IPR003891
Pfam
PF02847
502 613 112 6.30E-26
IPR003891

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj4g3v1989860.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v1989860.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.