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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR003890
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 34 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 7.553s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0146979.1
n.a. PREDICTED: regulator of nonsense transcripts 2-like [Glycine max] gi|356556505|ref|XP_003546565.1| chr0 67777224 67789021 -
3 domain predictions
2 GO terms
Lj0g3v0304579.1
n.a. PREDICTED: eukaryotic translation initiation factor 4G-like [Glycine max] gi|356503216|ref|XP_003520407.1| chr0 158642771 158650142 -
3 domain predictions
2 GO terms
Lj0g3v0304589.1
n.a. n.a. chr0 158642922 158649605 +
3 domain predictions
2 GO terms
Lj0g3v0326709.1
n.a. PREDICTED: eukaryotic translation initiation factor 4G-like [Glycine max] gi|356503216|ref|XP_003520407.1| chr0 170769621 170774915 +
3 domain predictions
2 GO terms
Lj0g3v0326709.2
n.a. PREDICTED: eukaryotic translation initiation factor 4G-like [Glycine max] gi|356503216|ref|XP_003520407.1| chr0 170769621 170774915 +
3 domain predictions
2 GO terms
Lj1g3v3904180.1
n.a. PREDICTED: nuclear cap-binding protein subunit 1-like [Glycine max] gi|356570247|ref|XP_003553301.1| chr1 45337120 45357060 -
3 domain predictions
2 GO terms
Lj1g3v3975790.1
n.a. PREDICTED: nucleolar MIF4G domain-containing protein 1-like [Glycine max] gi|356570325|ref|XP_003553340.1| chr1 47011959 47020364 +
3 domain predictions
2 GO terms
Lj2g3v1337470.1
n.a. PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Cicer arietinum] gi|502165076|ref|XP_004513404.1| chr2 20932591 20933637 -
2 domain predictions
2 GO terms
Lj4g3v1989860.1
n.a. PREDICTED: eukaryotic initiation factor iso-4F subunit p82-34-like isoform 2 [Glycine max] gi|356562557|ref|XP_003549536.1| chr4 27760096 27765934 -
3 domain predictions
2 GO terms
Lj6g3v0938260.1
n.a. PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Cicer arietinum] gi|502165076|ref|XP_004513404.1| chr6 10631930 10636477 -
2 domain predictions
2 GO terms
Lj6g3v1077310.2
n.a. PREDICTED: eukaryotic initiation factor iso-4F subunit p82-34-like [Glycine max] gi|356508366|ref|XP_003522928.1| chr6 12521330 12525188 +
3 domain predictions
2 GO terms
Lj6g3v1094850.1
n.a. PREDICTED: regulator of nonsense transcripts 2-like [Glycine max] gi|356556505|ref|XP_003546565.1| chr6 13570158 13581984 -
3 domain predictions
2 GO terms
LotjaGi1g1v0327400.1
n.a. Nucleolar MIF4G domain-containing protein 1; TAIR: AT5G17930.1 MIF4G domain-containing protein / MA3 domain-containing protein; Swiss-Prot: sp|Q5C9Z4|NOM1_HUMAN Nucleolar MIF4G domain-containing protein 1; TrEMBL-Plants: tr|A0A0B2RQV2|A0A0B2RQV2_GLYSO Nucleolar MIF4G domain-containing protein 1; Found in the gene: LotjaGi1g1v0327400 LjG1.1_chr1 78169925 78179809 +
3 domain predictions
2 GO terms
LotjaGi1g1v0327400.2
n.a. Nucleolar MIF4G domain-containing protein 1; TAIR: AT5G17930.1 MIF4G domain-containing protein / MA3 domain-containing protein; Swiss-Prot: sp|Q5C9Z4|NOM1_HUMAN Nucleolar MIF4G domain-containing protein 1; TrEMBL-Plants: tr|A0A0B2RQV2|A0A0B2RQV2_GLYSO Nucleolar MIF4G domain-containing protein 1; Found in the gene: LotjaGi1g1v0327400 LjG1.1_chr1 78169930 78179624 +
3 domain predictions
2 GO terms
LotjaGi1g1v0646000_LC.1
n.a. Nucleolar MIF4G domain-containing protein 1; TAIR: AT5G17930.1 MIF4G domain-containing protein / MA3 domain-containing protein; Swiss-Prot: sp|Q5C9Z4|NOM1_HUMAN Nucleolar MIF4G domain-containing protein 1; TrEMBL-Plants: tr|A0A1J7HJK2|A0A1J7HJK2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0646000_LC LjG1.1_chr1 120304447 120312763 +
3 domain predictions
2 GO terms
LotjaGi1g1v0646000_LC.2
n.a. Nucleolar MIF4G domain-containing protein 1; TAIR: AT5G17930.1 MIF4G domain-containing protein / MA3 domain-containing protein; Swiss-Prot: sp|Q5C9Z4|NOM1_HUMAN Nucleolar MIF4G domain-containing protein 1; TrEMBL-Plants: tr|A0A1J7HJK2|A0A1J7HJK2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0646000_LC LjG1.1_chr1 120304517 120312762 +
3 domain predictions
2 GO terms
LotjaGi3g1v0070600.1
n.a. Eukaryotic translation initiation factor 4G-like protein; TAIR: AT3G60240.2 eukaryotic translation initiation factor 4G; Swiss-Prot: sp|Q76E23|IF4G_ARATH Eukaryotic translation initiation factor 4G; TrEMBL-Plants: tr|K7L149|K7L149_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0070600 LjG1.1_chr3 7663418 7673753 +
3 domain predictions
2 GO terms
LotjaGi3g1v0070800.1
n.a. Eukaryotic translation initiation factor 4G-like protein; TAIR: AT3G60240.2 eukaryotic translation initiation factor 4G; Swiss-Prot: sp|Q76E23|IF4G_ARATH Eukaryotic translation initiation factor 4G; TrEMBL-Plants: tr|K7L149|K7L149_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0070800 LjG1.1_chr3 7674511 7684738 +
3 domain predictions
2 GO terms
LotjaGi3g1v0070800.2
n.a. Eukaryotic translation initiation factor 4G; TAIR: AT3G60240.2 eukaryotic translation initiation factor 4G; Swiss-Prot: sp|Q76E23|IF4G_ARATH Eukaryotic translation initiation factor 4G; TrEMBL-Plants: tr|K7LAK0|K7LAK0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0070800 LjG1.1_chr3 7675566 7684464 +
3 domain predictions
2 GO terms
LotjaGi4g1v0289300.1
n.a. Eukaryotic translation initiation factor 4G; TAIR: AT5G57870.2 MIF4G domain-containing protein / MA3 domain-containing protein; Swiss-Prot: sp|Q93ZT6|IF4G1_ARATH Eukaryotic translation initiation factor isoform 4G-1; TrEMBL-Plants: tr|I1MT11|I1MT11_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0289300 LjG1.1_chr4 66165486 66171975 -
3 domain predictions
2 GO terms
LotjaGi6g1v0182000.1
n.a. Pre-mRNA-splicing factor CWC22; TAIR: AT1G80930.1 MIF4G domain-containing protein / MA3 domain-containing protein; Swiss-Prot: sp|Q9VJ87|CWC22_DROME Pre-mRNA-splicing factor CWC22 homolog; TrEMBL-Plants: tr|A0A0L9VAV7|A0A0L9VAV7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0182000 LjG1.1_chr6 47421348 47426340 +
2 domain predictions
2 GO terms
LotjaGi6g1v0201800.1
n.a. Eukaryotic translation initiation factor 4G-like protein; TAIR: AT5G57870.2 MIF4G domain-containing protein / MA3 domain-containing protein; Swiss-Prot: sp|Q93ZT6|IF4G1_ARATH Eukaryotic translation initiation factor isoform 4G-1; TrEMBL-Plants: tr|A0A151QNR0|A0A151QNR0_CAJCA Eukaryotic initiation factor iso-4F subunit p82-34; Found in the gene: LotjaGi6g1v0201800 LjG1.1_chr6 49907588 49920002 +
3 domain predictions
2 GO terms
LotjaGi6g1v0201800.2
n.a. Eukaryotic translation initiation factor 4G; TAIR: AT5G57870.2 MIF4G domain-containing protein / MA3 domain-containing protein; Swiss-Prot: sp|Q93ZT6|IF4G1_ARATH Eukaryotic translation initiation factor isoform 4G-1; TrEMBL-Plants: tr|A0A151QNR0|A0A151QNR0_CAJCA Eukaryotic initiation factor iso-4F subunit p82-34; Found in the gene: LotjaGi6g1v0201800 LjG1.1_chr6 49907588 49920002 +
3 domain predictions
2 GO terms
LotjaGi6g1v0201800.3
n.a. Eukaryotic translation initiation factor 4G-like protein; TAIR: AT5G57870.2 MIF4G domain-containing protein / MA3 domain-containing protein; Swiss-Prot: sp|Q93ZT6|IF4G1_ARATH Eukaryotic translation initiation factor isoform 4G-1; TrEMBL-Plants: tr|A0A151QNR0|A0A151QNR0_CAJCA Eukaryotic initiation factor iso-4F subunit p82-34; Found in the gene: LotjaGi6g1v0201800 LjG1.1_chr6 49907622 49919814 +
3 domain predictions
2 GO terms
LotjaGi6g1v0201800.4
n.a. Eukaryotic translation initiation factor 4G-like protein; TAIR: AT5G57870.2 MIF4G domain-containing protein / MA3 domain-containing protein; Swiss-Prot: sp|Q93ZT6|IF4G1_ARATH Eukaryotic translation initiation factor isoform 4G-1; TrEMBL-Plants: tr|A0A151QNR0|A0A151QNR0_CAJCA Eukaryotic initiation factor iso-4F subunit p82-34; Found in the gene: LotjaGi6g1v0201800 LjG1.1_chr6 49907633 49919864 +
3 domain predictions
2 GO terms
LotjaGi6g1v0201800.5
n.a. Eukaryotic translation initiation factor 4G; TAIR: AT5G57870.2 MIF4G domain-containing protein / MA3 domain-containing protein; Swiss-Prot: sp|Q93ZT6|IF4G1_ARATH Eukaryotic translation initiation factor isoform 4G-1; TrEMBL-Plants: tr|A0A151QNR0|A0A151QNR0_CAJCA Eukaryotic initiation factor iso-4F subunit p82-34; Found in the gene: LotjaGi6g1v0201800 LjG1.1_chr6 49907633 49919864 +
3 domain predictions
2 GO terms
LotjaGi6g1v0212500.1
n.a. Regulator of nonsense transcripts 2; TAIR: AT2G39260.1 regulator of nonsense transcripts UPF2; Swiss-Prot: sp|F4IUX6|RENT2_ARATH Regulator of nonsense transcripts UPF2; TrEMBL-Plants: tr|I1MHT6|I1MHT6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0212500 LjG1.1_chr6 51021780 51034183 -
3 domain predictions
2 GO terms
LotjaGi6g1v0212500.2
n.a. Regulator of nonsense transcripts 2; TAIR: AT2G39260.1 regulator of nonsense transcripts UPF2; Swiss-Prot: sp|F4IUX6|RENT2_ARATH Regulator of nonsense transcripts UPF2; TrEMBL-Plants: tr|I1MHT6|I1MHT6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0212500 LjG1.1_chr6 51021891 51034172 -
3 domain predictions
2 GO terms
LotjaGi6g1v0212500.3
n.a. Regulator of nonsense transcripts 2; TAIR: AT2G39260.1 regulator of nonsense transcripts UPF2; Swiss-Prot: sp|F4IUX6|RENT2_ARATH Regulator of nonsense transcripts UPF2; TrEMBL-Plants: tr|I1MHT6|I1MHT6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0212500 LjG1.1_chr6 51022792 51032746 -
3 domain predictions
2 GO terms
LotjaGi6g1v0212500.4
n.a. Regulator of nonsense transcripts 2; TAIR: AT2G39260.1 regulator of nonsense transcripts UPF2; Swiss-Prot: sp|F4IUX6|RENT2_ARATH Regulator of nonsense transcripts UPF2; TrEMBL-Plants: tr|I1MHT6|I1MHT6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0212500 LjG1.1_chr6 51022792 51033145 -
3 domain predictions
2 GO terms
LotjaGi6g1v0212500.5
n.a. Regulator of nonsense transcripts 2; TAIR: AT2G39260.1 regulator of nonsense transcripts UPF2; Swiss-Prot: sp|F4IUX6|RENT2_ARATH Regulator of nonsense transcripts UPF2; TrEMBL-Plants: tr|I1MHT6|I1MHT6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0212500 LjG1.1_chr6 51022792 51033275 -
3 domain predictions
2 GO terms
LotjaGi6g1v0212500.6
n.a. Regulator of nonsense transcripts 2; TAIR: AT2G39260.1 regulator of nonsense transcripts UPF2; Swiss-Prot: sp|F4IUX6|RENT2_ARATH Regulator of nonsense transcripts UPF2; TrEMBL-Plants: tr|I1MHT6|I1MHT6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0212500 LjG1.1_chr6 51022792 51033275 -
3 domain predictions
2 GO terms
LotjaGi6g1v0212500.7
n.a. Regulator of nonsense transcripts 2; TAIR: AT2G39260.1 regulator of nonsense transcripts UPF2; Swiss-Prot: sp|F4IUX6|RENT2_ARATH Regulator of nonsense transcripts UPF2; TrEMBL-Plants: tr|I1MHT6|I1MHT6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0212500 LjG1.1_chr6 51022792 51033407 -
3 domain predictions
2 GO terms
LotjaGi6g1v0212500.8
n.a. Regulator of nonsense transcripts 2; TAIR: AT2G39260.1 regulator of nonsense transcripts UPF2; Swiss-Prot: sp|F4IUX6|RENT2_ARATH Regulator of nonsense transcripts UPF2; TrEMBL-Plants: tr|I1MHT6|I1MHT6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0212500 LjG1.1_chr6 51022792 51033431 -
3 domain predictions
2 GO terms