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Lj4g3v2096070.1

Overview

Field Value
Gene ID Lj4g3v2096070
Transcript ID Lj4g3v2096070.1
Lotus japonicus genome version MG20 v3.0
Description TPA: histone H4.3 [Zea mays] gi|414589551|tpg|DAA40122.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10484
1 103 103 1.10E-102 –
MobiDBLite
mobidb-lite
1 20 20 – –
Gene3D
G3DSA:1.10.20.10
2 103 102 1.80E-58
IPR009072
SUPERFAMILY
SSF47113
3 102 100 4.04E-32
IPR009072
PRINTS
PR00623
5 16 12 2.20E-63
IPR001951
ProSitePatterns
PS00047
15 19 5 –
IPR019809
SMART
SM00417
16 90 75 2.00E-29
IPR001951
CDD
cd00076
18 101 84 1.16E-41
IPR001951
PRINTS
PR00623
20 39 20 2.20E-63
IPR001951
Pfam
PF15511
35 96 62 1.40E-08 –
PRINTS
PR00623
40 60 21 2.20E-63
IPR001951
PRINTS
PR00623
62 76 15 2.20E-63
IPR001951
PRINTS
PR00623
77 89 13 2.20E-63
IPR001951
PRINTS
PR00623
89 100 12 2.20E-63
IPR001951

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000786
Cellular component Nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
Subterm of
Part of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0042025
Cellular component Host cell nucleus A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Subterm of
GO:0046982
Molecular function Protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
Subterm of

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj4g3v2096070.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2096070.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.