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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2122820 |
| Transcript ID | Lj4g3v2122820.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: LOW QUALITY PROTEIN: pumilio homolog 6, chloroplastic-like [Glycine max] gi|356550736|ref|XP_003543740.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 852 | 852 | 0 | – | |
| PANTHER | 1 | 852 | 852 | 0 | – | |
| MobiDBLite | 98 | 129 | 32 | – | – | |
| MobiDBLite | 139 | 158 | 20 | – | – | |
| MobiDBLite | 204 | 224 | 21 | – | – | |
| ProSiteProfiles | 567 | 853 | 287 | 102.749 | ||
| Gene3D | 569 | 849 | 281 | 2.90E-106 | ||
| SUPERFAMILY | 571 | 849 | 279 | 2.76E-93 | ||
| CDD | 582 | 853 | 272 | 5.96E-127 | ||
| SMART | 587 | 622 | 36 | 0.18 | ||
| ProSiteProfiles | 587 | 622 | 36 | 8.221 | ||
| ProSiteProfiles | 623 | 658 | 36 | 11.347 | ||
| SMART | 623 | 658 | 36 | 8.00E-09 | ||
| Pfam | 624 | 655 | 32 | 1.70E-08 | ||
| SMART | 659 | 694 | 36 | 3.80E-05 | ||
| ProSiteProfiles | 659 | 694 | 36 | 10.437 | ||
| Pfam | 661 | 689 | 29 | 6.00E-05 | ||
| SMART | 695 | 730 | 36 | 3.40E-06 | ||
| ProSiteProfiles | 695 | 730 | 36 | 9.714 | ||
| Pfam | 703 | 729 | 27 | 5.80E-06 | ||
| ProSiteProfiles | 731 | 767 | 37 | 9.69 | ||
| SMART | 731 | 767 | 37 | 9.90E-08 | ||
| Pfam | 739 | 766 | 28 | 1.00E-04 | ||
| SMART | 768 | 803 | 36 | 6.00E-04 | ||
| ProSiteProfiles | 768 | 803 | 36 | 10.577 | ||
| Pfam | 769 | 802 | 34 | 5.60E-05 | ||
| ProSiteProfiles | 804 | 839 | 36 | 10.904 | ||
| SMART | 804 | 839 | 36 | 3.70E-08 | ||
| Pfam | 805 | 838 | 34 | 1.00E-08 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of Lj4g3v2122820.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2122820.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.