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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2139630 |
| Transcript ID | Lj4g3v2139630.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: calcium-transporting ATPase 10, plasma membrane-type-like [Glycine max] gi|356562048|ref|XP_003549287.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 176 | 176 | – | – | |
| MobiDBLite | 1 | 25 | 25 | – | – | |
| Pfam | 20 | 63 | 44 | 1.10E-16 | ||
| PANTHER | 29 | 915 | 887 | 0 | – | |
| PANTHER | 29 | 915 | 887 | 0 | – | |
| TIGRFAM | 121 | 1041 | 921 | 0 | ||
| SMART | 128 | 202 | 75 | 9.00E-04 | ||
| SUPERFAMILY | 130 | 248 | 119 | 1.83E-115 | – | |
| Pfam | 131 | 197 | 67 | 2.40E-11 | ||
| TMHMM | 174 | 196 | 23 | – | – | |
| Phobius | 177 | 202 | 26 | – | – | |
| Phobius | 203 | 213 | 11 | – | – | |
| TMHMM | 211 | 230 | 20 | – | – | |
| Phobius | 214 | 233 | 20 | – | – | |
| PRINTS | 215 | 235 | 21 | 4.20E-11 | – | |
| Pfam | 217 | 463 | 247 | 1.40E-43 | ||
| Phobius | 234 | 363 | 130 | – | – | |
| SUPERFAMILY | 250 | 345 | 96 | 1.06E-25 | – | |
| Gene3D | 290 | 349 | 60 | 3.20E-154 | ||
| PRINTS | 296 | 310 | 15 | 2.80E-35 | – | |
| TMHMM | 314 | 336 | 23 | – | – | |
| SUPERFAMILY | 348 | 466 | 119 | 1.83E-115 | – | |
| TMHMM | 363 | 385 | 23 | – | – | |
| Phobius | 364 | 388 | 25 | – | – | |
| Phobius | 389 | 417 | 29 | – | – | |
| TIGRFAM | 412 | 501 | 90 | 1.20E-21 | ||
| Phobius | 418 | 444 | 27 | – | – | |
| TMHMM | 418 | 440 | 23 | – | – | |
| Phobius | 445 | 838 | 394 | – | – | |
| Gene3D | 462 | 679 | 218 | 1.60E-47 | ||
| PRINTS | 465 | 486 | 22 | 4.20E-11 | – | |
| Pfam | 470 | 793 | 324 | 3.50E-16 | – | |
| SUPERFAMILY | 470 | 490 | 21 | 9.72E-58 | ||
| PRINTS | 472 | 486 | 15 | 2.80E-35 | – | |
| ProSitePatterns | 474 | 480 | 7 | – | ||
| SUPERFAMILY | 479 | 676 | 198 | 7.19E-39 | ||
| PRINTS | 590 | 608 | 19 | 4.20E-11 | – | |
| SUPERFAMILY | 621 | 884 | 264 | 9.72E-58 | ||
| PRINTS | 672 | 683 | 12 | 2.80E-35 | – | |
| CDD | 682 | 798 | 117 | 3.63E-05 | – | |
| PRINTS | 694 | 704 | 11 | 2.80E-35 | – | |
| TIGRFAM | 745 | 859 | 115 | 7.10E-32 | ||
| Gene3D | 758 | 1040 | 283 | 3.20E-154 | ||
| PRINTS | 779 | 798 | 20 | 2.80E-35 | – | |
| PRINTS | 803 | 815 | 13 | 2.80E-35 | – | |
| SUPERFAMILY | 829 | 1041 | 213 | 1.83E-115 | – | |
| Phobius | 839 | 859 | 21 | – | – | |
| PRINTS | 851 | 872 | 22 | 4.20E-11 | – | |
| Phobius | 860 | 870 | 11 | – | – | |
| Pfam | 864 | 1039 | 176 | 1.60E-41 | ||
| Phobius | 871 | 890 | 20 | – | – | |
| Phobius | 891 | 910 | 20 | – | – | |
| Phobius | 911 | 930 | 20 | – | – | |
| PANTHER | 931 | 1047 | 117 | 0 | – | |
| Phobius | 931 | 984 | 54 | – | – | |
| PANTHER | 931 | 1047 | 117 | 0 | – | |
| TMHMM | 984 | 1006 | 23 | – | – | |
| Phobius | 985 | 1006 | 22 | – | – | |
| Phobius | 1007 | 1017 | 11 | – | – | |
| Phobius | 1018 | 1039 | 22 | – | – | |
| TMHMM | 1019 | 1041 | 23 | – | – | |
| Phobius | 1040 | 1047 | 8 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Calcium-transporting ATPase activity | Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Ca2+(cis) = ADP + phosphate + Ca2+(trans). | ||
| Molecular function | Calmodulin binding | Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Calcium ion transmembrane transport | A process in which a calcium ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. |
Expression pattern of Lj4g3v2139630.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2139630.1, powered by CORGI.
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