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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2203590 |
| Transcript ID | Lj4g3v2203590.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At2g06000-like [Glycine max] gi|356564752|ref|XP_003550612.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 22 | 22 | – | – | |
| Phobius | 1 | 3 | 3 | – | – | |
| SignalP | 1 | 22 | 22 | – | – | |
| Phobius | 4 | 17 | 14 | – | – | |
| Phobius | 18 | 22 | 5 | – | – | |
| Phobius | 23 | 550 | 528 | – | – | |
| PANTHER | 67 | 523 | 457 | 3.30E-258 | – | |
| PANTHER | 67 | 523 | 457 | 3.30E-258 | – | |
| ProSiteProfiles | 113 | 147 | 35 | 9.679 | ||
| TIGRFAM | 116 | 148 | 33 | 3.60E-04 | ||
| Pfam | 116 | 144 | 29 | 3.50E-04 | ||
| ProSiteProfiles | 148 | 182 | 35 | 5.02 | ||
| Gene3D | 183 | 270 | 88 | 3.80E-05 | ||
| ProSiteProfiles | 183 | 217 | 35 | 8.769 | ||
| TIGRFAM | 185 | 213 | 29 | 0.0017 | ||
| Pfam | 185 | 212 | 28 | 0.019 | ||
| ProSiteProfiles | 218 | 252 | 35 | 12.474 | ||
| Pfam | 219 | 266 | 48 | 2.20E-16 | ||
| TIGRFAM | 221 | 254 | 34 | 1.90E-10 | ||
| ProSiteProfiles | 253 | 288 | 36 | 10.38 | ||
| TIGRFAM | 255 | 290 | 36 | 2.70E-07 | ||
| Pfam | 288 | 337 | 50 | 2.20E-17 | ||
| ProSiteProfiles | 289 | 323 | 35 | 13.088 | ||
| TIGRFAM | 292 | 325 | 34 | 8.90E-10 | ||
| ProSiteProfiles | 324 | 358 | 35 | 12.814 | ||
| TIGRFAM | 326 | 360 | 35 | 1.30E-09 | ||
| Pfam | 358 | 407 | 50 | 1.10E-13 | ||
| ProSiteProfiles | 359 | 393 | 35 | 11.433 | ||
| TIGRFAM | 361 | 392 | 32 | 1.80E-06 | ||
| ProSiteProfiles | 394 | 428 | 35 | 11.027 | ||
| TIGRFAM | 396 | 428 | 33 | 4.30E-06 | ||
| Gene3D | 397 | 519 | 123 | 3.80E-05 | ||
| ProSiteProfiles | 429 | 459 | 31 | 10.128 | ||
| Pfam | 432 | 475 | 44 | 1.20E-12 | ||
| TIGRFAM | 432 | 462 | 31 | 9.30E-07 | ||
| ProSiteProfiles | 463 | 497 | 35 | 10.907 | ||
| TIGRFAM | 465 | 499 | 35 | 1.40E-06 | ||
| ProSiteProfiles | 498 | 528 | 31 | 6.106 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj4g3v2203590.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2203590.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.