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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2215390 |
| Transcript ID | Lj4g3v2215390.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At2g15630, mitochondrial-like [Glycine max] gi|356544498|ref|XP_003540687.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 22 | 22 | – | – | |
| PANTHER | 30 | 73 | 44 | 1.00E-108 | – | |
| PANTHER | 91 | 467 | 377 | 1.00E-108 | – | |
| ProSiteProfiles | 123 | 157 | 35 | 9.898 | ||
| TIGRFAM | 127 | 157 | 31 | 4.00E-04 | ||
| Pfam | 128 | 155 | 28 | 2.30E-04 | ||
| ProSiteProfiles | 222 | 256 | 35 | 5.612 | ||
| SUPERFAMILY | 229 | 293 | 65 | 2.09E-05 | ||
| Gene3D | 233 | 311 | 79 | 2.60E-07 | ||
| ProSiteProfiles | 259 | 293 | 35 | 9.558 | ||
| Pfam | 261 | 291 | 31 | 0.025 | ||
| TIGRFAM | 261 | 294 | 34 | 1.10E-05 | ||
| ProSiteProfiles | 294 | 328 | 35 | 10.512 | ||
| Pfam | 296 | 342 | 47 | 7.10E-11 | ||
| TIGRFAM | 296 | 330 | 35 | 6.60E-06 | ||
| ProSiteProfiles | 329 | 363 | 35 | 10.643 | ||
| TIGRFAM | 331 | 364 | 34 | 4.60E-04 | ||
| Pfam | 363 | 410 | 48 | 2.00E-14 | ||
| SUPERFAMILY | 363 | 464 | 102 | 2.09E-05 | ||
| ProSiteProfiles | 364 | 398 | 35 | 13.625 | ||
| TIGRFAM | 366 | 399 | 34 | 3.50E-08 | ||
| Gene3D | 367 | 465 | 99 | 2.60E-07 | ||
| ProSiteProfiles | 399 | 434 | 36 | 9.657 | ||
| ProSiteProfiles | 435 | 469 | 35 | 9.262 | ||
| TIGRFAM | 438 | 468 | 31 | 3.70E-05 | ||
| Pfam | 438 | 467 | 30 | 2.10E-04 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj4g3v2215390.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2215390.1, powered by CORGI.
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