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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2250230 |
| Transcript ID | Lj4g3v2250230.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | ARM repeat superfamily protein [Theobroma cacao] gi|508714972|gb|EOY06869.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 437 | 437 | 0 | – | |
| PANTHER | 1 | 437 | 437 | 0 | – | |
| SUPERFAMILY | 1 | 427 | 427 | 3.58E-63 | ||
| Gene3D | 3 | 656 | 654 | 2.10E-61 | ||
| ProSiteProfiles | 25 | 94 | 70 | 9.306 | ||
| Pfam | 25 | 94 | 70 | 9.70E-07 | ||
| SMART | 25 | 94 | 70 | 0.0015 | ||
| MobiDBLite | 407 | 439 | 33 | – | – | |
| PANTHER | 462 | 1099 | 638 | 0 | – | |
| PANTHER | 462 | 1099 | 638 | 0 | – | |
| SUPERFAMILY | 473 | 665 | 193 | 3.58E-63 | ||
| SUPERFAMILY | 708 | 1015 | 308 | 3.58E-63 | ||
| Gene3D | 965 | 1032 | 68 | 9.20E-04 | – | |
| Coils | 966 | 986 | 21 | – | – | |
| MobiDBLite | 968 | 1014 | 47 | – | – | |
| Coils | 1007 | 1027 | 21 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. | ||
| Molecular function | Ran GTPase binding | Interacting selectively and non-covalently with Ran, a conserved Ras-like GTP-binding protein, implicated in nucleocytoplasmic transport, cell cycle progression, spindle assembly, nuclear organization and nuclear envelope (NE) assembly. |
Expression pattern of Lj4g3v2250230.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2250230.1, powered by CORGI.
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