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Lj4g3v2292350.1

Overview

Field Value
Gene ID Lj4g3v2292350
Transcript ID Lj4g3v2292350.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: RING-H2 finger protein ATL2-like [Cicer arietinum] gi|502150934|ref|XP_004508196.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR14155
1 153 153 2.30E-49 –
PANTHER
PTHR14155:SF99
1 153 153 2.30E-49 –
Phobius
NON_CYTOPLASMIC_DOMAIN
1 5 5 – –
TMHMM
TMhelix
5 27 23 – –
Phobius
TRANSMEMBRANE
6 26 21 – –
Phobius
CYTOPLASMIC_DOMAIN
27 236 210 – –
SUPERFAMILY
SSF57850
65 133 69 1.08E-23 –
Gene3D
G3DSA:3.30.40.10
83 130 48 1.10E-19
IPR013083
CDD
cd00162
84 130 47 1.44E-10 –
Pfam
PF13639
84 127 44 1.90E-13
IPR001841
SMART
SM00184
85 126 42 5.80E-07
IPR001841
ProSiteProfiles
PS50089
85 127 43 12.843
IPR001841

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj4g3v2292350.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2292350.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.