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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2313700 |
| Transcript ID | Lj4g3v2313700.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At4g20770-like [Cicer arietinum] gi|502159687|ref|XP_004511497.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 41 | 71 | 31 | 6.884 | ||
| PANTHER | 60 | 377 | 318 | 0 | – | |
| PANTHER | 60 | 377 | 318 | 0 | – | |
| ProSiteProfiles | 72 | 106 | 35 | 9.876 | ||
| TIGRFAM | 74 | 103 | 30 | 0.0013 | ||
| Pfam | 74 | 103 | 30 | 0.001 | ||
| ProSiteProfiles | 179 | 209 | 31 | 6.675 | ||
| Pfam | 184 | 205 | 22 | 0.37 | ||
| Pfam | 209 | 257 | 49 | 2.30E-11 | ||
| ProSiteProfiles | 210 | 244 | 35 | 11.981 | ||
| TIGRFAM | 212 | 245 | 34 | 7.60E-08 | ||
| Gene3D | 224 | 240 | 17 | 2.60E-10 | ||
| Gene3D | 288 | 489 | 202 | 2.60E-10 | ||
| ProSiteProfiles | 291 | 321 | 31 | 7.848 | ||
| Pfam | 296 | 315 | 20 | 0.028 | ||
| Pfam | 322 | 369 | 48 | 8.00E-11 | ||
| ProSiteProfiles | 322 | 356 | 35 | 10.578 | ||
| TIGRFAM | 324 | 357 | 34 | 6.10E-08 | ||
| ProSiteProfiles | 357 | 387 | 31 | 6.873 | ||
| ProSiteProfiles | 388 | 422 | 35 | 8.901 | ||
| Pfam | 391 | 416 | 26 | 0.0075 | ||
| TIGRFAM | 391 | 423 | 33 | 0.0021 | ||
| ProSiteProfiles | 423 | 457 | 35 | 6.215 | ||
| ProSiteProfiles | 458 | 488 | 31 | 7.355 | ||
| Pfam | 463 | 488 | 26 | 0.036 | ||
| PANTHER | 488 | 768 | 281 | 0 | – | |
| PANTHER | 488 | 768 | 281 | 0 | – | |
| ProSiteProfiles | 489 | 523 | 35 | 10.49 | ||
| Pfam | 491 | 521 | 31 | 1.80E-04 | ||
| TIGRFAM | 491 | 524 | 34 | 3.00E-04 | ||
| ProSiteProfiles | 524 | 558 | 35 | 6.511 | ||
| ProSiteProfiles | 559 | 589 | 31 | 7.706 | ||
| Pfam | 589 | 636 | 48 | 6.40E-11 | ||
| ProSiteProfiles | 590 | 624 | 35 | 11.148 | ||
| TIGRFAM | 592 | 625 | 34 | 2.70E-07 | ||
| ProSiteProfiles | 625 | 660 | 36 | 8.32 | ||
| SUPERFAMILY | 645 | 749 | 105 | 3.16E-05 | ||
| ProSiteProfiles | 661 | 691 | 31 | 7.848 | ||
| Pfam | 664 | 691 | 28 | 0.0081 | ||
| TIGRFAM | 665 | 691 | 27 | 4.80E-04 | ||
| Gene3D | 691 | 748 | 58 | 2.60E-10 | ||
| ProSiteProfiles | 727 | 761 | 35 | 7.552 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj4g3v2313700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2313700.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.