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Lj4g3v2367300.2

Overview

Field Value
Gene ID Lj4g3v2367300
Transcript ID Lj4g3v2367300.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: cullin-1-like isoform 1 [Glycine max] gi|356563944|ref|XP_003550217.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11932
1 520 520 0 –
SUPERFAMILY
SSF74788
1 161 161 5.75E-39
IPR016159
Pfam
PF00888
1 423 423 1.00E-130
IPR001373
PANTHER
PTHR11932:SF84
1 520 520 0 –
Gene3D
G3DSA:1.20.1310.10
1 39 39 6.00E-08 –
Gene3D
G3DSA:1.20.1310.10
45 169 125 3.00E-33 –
SUPERFAMILY
SSF75632
164 433 270 1.06E-91
IPR016158
ProSiteProfiles
PS50069
166 395 230 50.064
IPR016158
Gene3D
G3DSA:1.20.1310.10
170 278 109 4.80E-38 –
SMART
SM00182
197 345 149 1.90E-72
IPR016158
Gene3D
G3DSA:4.10.1030.10
282 354 73 2.60E-28 –
Gene3D
G3DSA:1.10.10.10
355 422 68 6.50E-14
IPR011991
Gene3D
G3DSA:1.10.10.10
423 520 98 3.00E-32
IPR011991
SUPERFAMILY
SSF46785
434 520 87 9.31E-27
IPR011991
SMART
SM00884
447 514 68 5.40E-33
IPR019559
Pfam
PF10557
450 512 63 1.40E-24
IPR019559

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006511
Biological process Ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
Subterm of
GO:0031625
Molecular function Ubiquitin protein ligase binding Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins.
Subterm of

Genome browser

LORE1 insertions 10

Expression data

Expression pattern

Expression pattern of Lj4g3v2367300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2367300.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.