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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2436020 |
| Transcript ID | Lj4g3v2436020.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | CRY [Pisum sativum] gi|113206404|gb|ABI34432.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 23 | 264 | 242 | 1.00E-99 | – | |
| PANTHER | 23 | 264 | 242 | 1.00E-99 | ||
| SMART | 24 | 95 | 72 | 1.30E-26 | – | |
| Pfam | 24 | 87 | 64 | 1.30E-29 | ||
| Coils | 39 | 59 | 21 | – | – | |
| ProSiteProfiles | 125 | 329 | 205 | 23.894 | ||
| Pfam | 151 | 265 | 115 | 1.30E-35 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Transcription coregulator activity | A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to either activate or repress the transcription of specific genes. Coregulators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. A third class modulates interactions of DNA-binding transcription factor with other transcription coregulators. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
Expression pattern of Lj4g3v2436020.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2436020.1, powered by CORGI.
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